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AUTHORS FIT D2(SIG)/D(XL)/D(PT**2) BY (1-XL)**POWER*EXP(-SLOPE*PT**2).

AUTHORS FIT D2(SIG)/D(XL)/D(PT**2) BY (1-XL)**POWER*EXP(-SLOPE*PT**2).

AUTHORS FIT D2(SIG)/D(XL)/D(PT**2) BY (1-XL)**POWER*EXP(-SLOPE*PT**2).

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Total $J/\psi$ efficiency as a function of cos$\theta$ for $2 < p_{T}^{J/\psi} < 3$ GeV/c

Total $J/\psi$ efficiency as a function of cos$\theta$ for $3 < p_{T}^{J/\psi} < 4$ GeV/c

Total $J/\psi$ efficiency as a function of cos$\theta$ for $4 < p_{T}^{J/\psi} < 6$ GeV/c

Different contributions to total $J/\psi$ efficiency as a function of cos$\theta$ for $2 < p_{T}^{J/\psi} < 3$ GeV/c

Different contributions to total $J/\psi$ efficiency as a function of cos$\theta$ for $3 < p_{T}^{J/\psi} < 4$ GeV/c

Different contributions to total $J/\psi$ efficiency as a function of cos$\theta$ for $4 < p_{T}^{J/\psi} < 6$ GeV/c

Corrected cos$\theta$ distribution for $2 < p_{T}^{J/\psi} < 3$ GeV/c

Corrected cos$\theta$ distribution for $3 < p_{T}^{J/\psi} < 4$ GeV/c

Corrected cos$\theta$ distribution for $4 < p_{T}^{J/\psi} < 6$ GeV/c

$J/\psi$ polarization parameter $\lambda_{\theta}$ as a function of $J/\psi$ $p_{T}$ for rapidity |y|<1

The invariant yield versus transverse momentum for |y| < 1 in 0-60% centrality in Au+Au collisions (solid circles). The results are compared to high-$p_T$ (3 < $p_T$ < 10 GeV/c) results from STAR [9] (solid squares) and PHENIX data [8] (open squares). Also shown is the yield in 0-60% centrality Cu+Cu collisions for low $p_T$ (solid triangles) and high $p_T$ [48] (open triangles). The models are described in the text [49, 50]. The $J/\psi$ cross section in p+p collisions is also shown at STAR (stars) and PHENIX [51] (diamonds), and the scale is indicated on the right axis.

The $J/\psi$ nuclear modification factor versus transverse momentum for |y| < 1 and $p_T$ < 5 GeV/c for 0-60% centrality Au+Au collisions (solid circles). The data are compared with STAR high-$p_T$ (5 < $p_T$ < 10 GeV/c) results [9] and PHENIX results [8] in |y| < 0.35 (open squares). The statistical and systematic uncertainties on the baseline $J/\psi$ cross section in p+p collisions are indicated by the hatched and solid bands, respectively. Boxes on the vertical axes represent the uncertainty on $N_{coll}$ combined with the uncertainty on the inelastic cross section in p+p collisions

The $J/\psi$ nuclear modification factor versus transverse momentum for |y| < 1 and $p_T$ < 5 GeV/c for 0-20% centrality Au+Au collisions (solid circles). The data are compared with STAR high-$p_T$ (5 < $p_T$ < 10 GeV/c) results [9] and PHENIX results [8] in |y| < 0.35 (open squares). The statistical and systematic uncertainties on the baseline $J/\psi$ cross section in p+p collisions are indicated by the hatched and solid bands, respectively. Boxes on the vertical axes represent the uncertainty on $N_{coll}$ combined with the uncertainty on the inelastic cross section in p+p collisions

The $J/\psi$ nuclear modification factor versus transverse momentum for |y| < 1 and $p_T$ < 5 GeV/c for 20-40% centrality Au+Au collisions (solid circles). The data are compared with STAR high-$p_T$ (5 < $p_T$ < 10 GeV/c) results [9] and PHENIX results [8] in |y| < 0.35 (open squares). The statistical and systematic uncertainties on the baseline $J/\psi$ cross section in p+p collisions are indicated by the hatched and solid bands, respectively. Boxes on the vertical axes represent the uncertainty on $N_{coll}$ combined with the uncertainty on the inelastic cross section in p+p collisions

The $J/\psi$ nuclear modification factor versus transverse momentum for |y| < 1 and $p_T$ < 5 GeV/c for 40-60% centrality Au+Au collisions (solid circles). The data are compared with STAR high-$p_T$ (5 < $p_T$ < 10 GeV/c) results [9] and PHENIX results [8] in |y| < 0.35 (open squares). The statistical and systematic uncertainties on the baseline $J/\psi$ cross section in p+p collisions are indicated by the hatched and solid bands, respectively. Boxes on the vertical axes represent the uncertainty on $N_{coll}$ combined with the uncertainty on the inelastic cross section in p+p collisions

The $J/\psi$ invariant yield and nuclear modification factor as a function of centrality for |y| < 1 in Au+Au collisions at $\sqrt{s_{NN}}$ = 200 GeV.

The $J/\psi$ invariant yield $Bd^2N/(2\pi p_Tdydp_T) [(GeV/c)^{-2}]$ and nuclear modification factor as a function of transverse momentum for |y| < 1 in Cu+Cu collisions at $\sqrt{s_{NN}}$ = 200 GeV.

The $J/\psi$ invariant yield and nuclear modification factor for |y| < 1 in Cu+Cu collisions at $\sqrt{s_{NN}}$ = 200 GeV.

$\Upsilon$(nS) polarization parameter $\tilde\lambda$ in the HX frame for $p_T$ of 10 to 15 GeV. The global uncertainties, independent of state and $N_{ch}$ bin, are also indicated.

$\Upsilon$(nS) polarization parameter $\lambda_\vartheta$ in the HX frame for $p_T$ of 15 to 35 GeV. The global uncertainties, independent of state and $N_{ch}$ bin, are also indicated.

$\Upsilon$(nS) polarization parameter $\lambda_\varphi$ in the HX frame for $p_T$ of 15 to 35 GeV. The global uncertainties, independent of state and $N_{ch}$ bin, are also indicated.

$\Upsilon$(nS) polarization parameter $\lambda_{\vartheta\varphi}$ in the HX frame for $p_T$ of 15 to 35 GeV. The global uncertainties, independent of state and $N_{ch}$ bin, are also indicated.

$\Upsilon$(nS) polarization parameter $\tilde\lambda$ in the HX frame for $p_T$ of 15 to 35 GeV. The global uncertainties, independent of state and $N_{ch}$ bin, are also indicated.

$\rho^0$ production cross section determined with the data set collected with trigger B, as a function of momentum transfer $t$, fitted with a double exponential fit function in the range $t < 0.1$. The statistical errors are shown. The ratio of incoherent to coherent cross sections is measured to be $0.20 \pm 0.8$. The fit parameters are shown in Table I.

Comparison of theoretical predictions to the measured total cross section for coherent $\rho^0$ production as a functionof $\sqrt{s_{NN}}$ . The measured cross section is based on the dataset collected with trigger B. The error bars show the sum of the statistical and systematic uncertainties. See text for details.