A search for the supersymmetric partners of the Standard Model bottom and top quarks is presented. The search uses 36.1 fb$^{-1}$ of $pp$ collision data at $\sqrt{s}=13$ TeV collected by the ATLAS experiment at the Large Hadron Collider. Direct production of pairs of bottom and top squarks ($\tilde{b}_{1}$ and $\tilde{t}_{1}$) is searched for in final states with $b$-tagged jets and missing transverse momentum. Distinctive selections are defined with either no charged leptons (electrons or muons) in the final state, or one charged lepton. The zero-lepton selection targets models in which the $\tilde{b}_{1}$ is the lightest squark and decays via $\tilde{b}_{1} \rightarrow b \tilde{\chi}^{0}_{1}$, where $\tilde{\chi}^{0}_{1}$ is the lightest neutralino. The one-lepton final state targets models where bottom or top squarks are produced and can decay into multiple channels, $\tilde{b}_{1} \rightarrow b \tilde{\chi}^{0}_{1}$ and $\tilde{b}_{1} \rightarrow t \tilde{\chi}^{\pm}_{1}$, or $\tilde{t}_{1} \rightarrow t \tilde{\chi}^{0}_{1}$ and $\tilde{t}_{1} \rightarrow b \tilde{\chi}^{\pm}_{1}$, where $\tilde{\chi}^{\pm}_{1}$ is the lightest chargino and the mass difference $m_{\tilde{\chi}^{\pm}_{1}}- m_{\tilde{\chi}^{0}_{1}}$ is set to 1 GeV. No excess above the expected Standard Model background is observed. Exclusion limits at 95\% confidence level on the mass of third-generation squarks are derived in various supersymmetry-inspired simplified models.
Two related searches for phenomena beyond the standard model (BSM) are performed using events with hadronic jets and significant transverse momentum imbalance. The results are based on a sample of proton-proton collisions at a center-of-mass energy of 13 TeV, collected by the CMS experiment at the LHC in 2016-2018 and corresponding to an integrated luminosity of 137 fb$^{-1}$. The first search is inclusive, based on signal regions defined by the hadronic energy in the event, the jet multiplicity, the number of jets identified as originating from bottom quarks, and the value of the kinematic variable $M_\mathrm{T2}$ for events with at least two jets. For events with exactly one jet, the transverse momentum of the jet is used instead. The second search looks in addition for disappearing tracks produced by BSM long-lived charged particles that decay within the volume of the tracking detector. No excess event yield is observed above the predicted standard model background. This is used to constrain a range of BSM models that predict the following: the pair production of gluinos and squarks in the context of supersymmetry models conserving $R$-parity, with or without intermediate long-lived charginos produced in the decay chain; the resonant production of a colored scalar state decaying to a massive Dirac fermion and a quark; or the pair production of scalar and vector leptoquarks each decaying to a neutrino and a top, bottom, or light-flavor quark. In most of the cases, the results obtained are the most stringent constraints to date.
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