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High-energy proton- and deuteron-nucleus collisions provide an excellent tool for studying a wide array of physics effects, including modifications of parton distribution functions in nuclei, gluon saturation, and color neutralization and hadronization in a nuclear environment, among others. All of these effects are expected to have a significant dependence on the size of the nuclear target and the impact parameter of the collision, also known as the collision centrality. In this article, we detail a method for determining centrality classes in p(d)+A collisions via cuts on the multiplicity at backward rapidity (i.e., the nucleus-going direction) and for determining systematic uncertainties in this procedure. For d+Au collisions at sqrt(s_NN) = 200 GeV we find that the connection to geometry is confirmed by measuring the fraction of events in which a neutron from the deuteron does not interact with the nucleus. As an application, we consider the nuclear modification factors R_{p(d)+A}, for which there is a potential bias in the measured centrality dependent yields due to auto-correlations between the process of interest and the backward rapidity multiplicity. We determine the bias correction factor within this framework. This method is further tested using the HIJING Monte Carlo generator. We find that for d+Au collisions at sqrt(s_NN)=200 GeV, these bias corrections are small and vary by less than 5% (10%) up to p_T = 10 (20) GeV. In contrast, for p+Pb collisions at sqrt(s_NN) = 5.02 TeV we find these bias factors are an order of magnitude larger and strongly p_T dependent, likely due to the larger effect of multi-parton interactions.

We present measurements of $e^+e^-$ production at midrapidity in Au$+$Au collisions at $\sqrt{s_{_{NN}}}$ = 200 GeV. The invariant yield is studied within the PHENIX detector acceptance over a wide range of mass ($m_{ee} <$ 5 GeV/$c^2$) and pair transverse momentum ($p_T$ $<$ 5 GeV/$c$), for minimum bias and for five centrality classes. The \ee yield is compared to the expectations from known sources. In the low-mass region ($m_{ee}=0.30$--0.76 GeV/$c^2$) there is an enhancement that increases with centrality and is distributed over the entire pair \pt range measured. It is significantly smaller than previously reported by the PHENIX experiment and amounts to $2.3\pm0.4({\rm stat})\pm0.4({\rm syst})\pm0.2^{\rm model}$ or to $1.7\pm0.3({\rm stat})\pm0.3({\rm syst})\pm0.2^{\rm model}$ for minimum bias collisions when the open-heavy-flavor contribution is calculated with {\sc pythia} or {\sc mc@nlo}, respectively. The inclusive mass and $p_T$ distributions as well as the centrality dependence are well reproduced by model calculations where the enhancement mainly originates from the melting of the $\rho$ meson resonance as the system approaches chiral symmetry restoration. In the intermediate-mass region ($m_{ee}$ = 1.2--2.8 GeV/$c^2$), the data hint at a significant contribution in addition to the yield from the semileptonic decays of heavy-flavor mesons.

Direct photons have been measured in sqrt(s_NN)=200 GeV d+Au collisions at midrapidity. A wide p_T range is covered by measurements of nearly-real virtual photons (1<p_T<6 GeV/c) and real photons (5<p_T<16 GeV/c). The invariant yield of the direct photons in d+Au collisions over the scaled p+p cross section is consistent with unity. Theoretical calculations assuming standard cold nuclear matter effects describe the data well for the entire p_T range. This indicates that the large enhancement of direct photons observed in Au+Au collisions for 1.0<p_T<2.5 GeV/c is due to a source other than the initial-state nuclear effects.

The PHENIX experiment has measured $\phi$ meson production in $d$$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV using the dimuon and dielectron decay channels. The $\phi$ meson is measured in the forward (backward) $d$-going (Au-going) direction, $1.2<y<2.2$ ($-2.2<y<-1.2$) in the transverse-momentum ($p_T$) range from 1--7 GeV/$c$, and at midrapidity $|y|<0.35$ in the $p_T$ range below 7 GeV/$c$. The $\phi$ meson invariant yields and nuclear-modification factors as a function of $p_T$, rapidity, and centrality are reported. An enhancement of $\phi$ meson production is observed in the Au-going direction, while suppression is seen in the $d$-going direction, and no modification is observed at midrapidity relative to the yield in $p$$+$$p$ collisions scaled by the number of binary collisions. Similar behavior was previously observed for inclusive charged hadrons and open heavy flavor indicating similar cold-nuclear-matter effects.

The measurement of the direct-photon spectrum from Au$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV is presented by the PHENIX collaboration using the external-photon-conversion technique for 0%--93% central collisions in a transverse-momentum ($p_T$) range of 0.8--10 GeV/$c$. An excess of direct photons, above prompt-photon production from hard-scattering processes, is observed for $p_T<6$ GeV/$c$. Nonprompt direct photons are measured by subtracting the prompt component, which is estimated as $N_{\rm coll}$-scaled direct photons from $p$ $+$ $p$ collisions at 200 GeV, from the direct-photon spectrum. Results are obtained for $0.8<p_T<6.0$ GeV/$c$ and suggest that the spectrum has an increasing inverse slope from ${\approx}0.2$ to 0.4 GeV/$c$ with increasing $p_T$, which indicates a possible sensitivity of the measurement to photons from earlier stages of the evolution of the collision. In addition, like the direct-photon production, the $p_T$-integrated nonprompt direct-photon yields also follow a power-law scaling behavior as a function of collision-system size. The exponent, $\alpha$, for the nonprompt component is found to be consistent with 1.1 with no apparent $p_T$ dependence.

The second Fourier component v_2 of the azimuthal anisotropy with respect to the reaction plane was measured for direct photons at midrapidity and transverse momentum (p_T) of 1--13 GeV/c in Au+Au collisions at sqr(s_NN)=200 GeV. Previous measurements of this quantity for hadrons with p_T < 6 GeV/c indicate that the medium behaves like a nearly perfect fluid, while for p_T > 6 GeV/c a reduced anisotropy is interpreted in terms of a path-length dependence for parton energy loss. In this measurement with the PHENIX detector at the Relativistic Heavy Ion Collider we find that for p_T > 4 GeV/c the anisotropy for direct photons is consistent with zero, as expected if the dominant source of direct photons is initial hard scattering. However, in the p_T < 4 GeV/c region dominated by thermal photons, we find a substantial direct photon v_2 comparable to that of hadrons, whereas model calculations for thermal photons in this kinematic region significantly underpredict the observed v_2.

The invariant yields for $J/\psi$ production at forward rapidity $(1.2<|y|<2.2)$ in U$+$U collisions at $\sqrt{s_{_{NN}}}$=193 GeV have been measured as a function of collision centrality. The invariant yields and nuclear-modification factor $R_{AA}$ are presented and compared with those from Au$+$Au collisions in the same rapidity range. Additionally, the direct ratio of the invariant yields from U$+$U and Au$+$Au collisions within the same centrality class is presented, and used to investigate the role of $c\bar{c}$ coalescence. Two different parameterizations of the deformed Woods-Saxon distribution were used in Glauber calculations to determine the values of the number of nucleon-nucleon collisions in each centrality class, $N_{\rm coll}$, and these were found to give significantly different $N_{\rm coll}$ values. Results using $N_{\rm coll}$ values from both deformed Woods-Saxon distributions are presented. The measured ratios show that the $J/\psi$ suppression, relative to binary collision scaling, is similar in U$+$U and Au$+$Au for peripheral and midcentral collisions, but that $J/\psi$ show less suppression for the most central U$+$U collisions. The results are consistent with a picture in which, for central collisions, increase in the $J/\psi$ yield due to $c\bar{c}$ coalescence becomes more important than the decrease in yield due to increased energy density. For midcentral collisions, the conclusions about the balance between $c\bar{c}$ coalescence and suppression depend on which deformed Woods-Saxon distribution is used to determine $N_{\rm coll}$.

New measurements by the PHENIX experiment at RHIC for eta production at midrapidity as a function of transverse momentum (p_T) and collision centrality in sqrt(s_NN) = 200 GeV Au+Au and p+p collisions are presented. They indicate nuclear modification factors (R_AA) that are similar both in magnitude and trend to those found in earlier pi^0 measurements. Linear fits to R_AA in the 5--20 GeV/c p_T region show that the slope is consistent with zero within two standard deviations at all centralities although a slow rise cannot be excluded. Having different statistical and systematic uncertainties the pi^0 and eta measurements are complementary at high p_T/ thus, along with the extended p_T range of these data they can provide additional constraints for theoretical modeling and the extraction of transport properties.

We report on charmonium measurements [J/psi(1S), psi'(2S), and chi_c(1P)] in p+p collisions at sqrt(s)=200 GeV. We find that the fraction of J/psi coming from the feed-down decay of psi' and chi_c in the midrapidity region ($|\eta|<0.35$) is 9.6+/-2.4% and 32+/-9%, respectively. We also report new, higher statistics p_T and rapidity dependencies of the J/psi yield via dielectron decay in the same midrapidity range and at forward rapidity (1.2<|eta|<2.4) via dimuon decay. These results are compared with measurements from other experiments and discussed in the context of current charmonium production models.

Flow coefficients v_n for n = 2, 3, 4, characterizing the anisotropic collective flow in Au+Au collisions at sqrt(s_NN) = 200 GeV, are measured relative to event planes Ψ_n determined at large rapidity. We report v_n as a function of transverse momentum and collision centrality, and study the correlations among the event planes of different order n. The v_n are well described by hydrodynamic models which employ a Glauber Monte Carlo initial state geometry with fluctuations, providing additional constraining power on the interplay between initial conditions and the effects of viscosity as the system evolves. This new constraint improves precision of the extracted viscosity to entropy density ratio eta/s.

Heavy quarkonia are observed to be suppressed in relativistic heavy ion collisions relative to their production in p+p collisions scaled by the number of binary collisions. In order to determine if this suppression is related to color screening of these states in the produced medium, one needs to account for other nuclear modifications including those in cold nuclear matter. In this paper, we present new measurements from the PHENIX 2007 data set of J/psi yields at forward rapidity (1.2<|y|<2.2) in Au+Au collisions at sqrt(s_NN)=200 GeV. The data confirm the earlier finding that the suppression of J/psi at forward rapidity is stronger than at midrapidity, while also extending the measurement to finer bins in collision centrality and higher transverse momentum (pT). We compare the experimental data to the most recent theoretical calculations that incorporate a variety of physics mechanisms including gluon saturation, gluon shadowing, initial-state parton energy loss, cold nuclear matter breakup, color screening, and charm recombination. We find J/psi suppression beyond cold-nuclear-matter effects. However, the current level of disagreement between models and d+Au data precludes using these models to quantify the hot-nuclear-matter suppression.

The PHENIX collaboration presents first measurements of low-momentum ($0.4<p_T<3$ GeV/$c$) direct-photon yields from Au$+$Au collisions at $\sqrt{s_{_{NN}}}$=39 and 62.4 GeV. For both beam energies the direct-photon yields are substantially enhanced with respect to expectations from prompt processes, similar to the yields observed in Au$+$Au collisions at $\sqrt{s_{_{NN}}}$=200. Analyzing the photon yield as a function of the experimental observable $dN_{\rm ch}/d\eta$ reveals that the low-momentum ($>$1\,GeV/$c$) direct-photon yield $dN_{\gamma}^{\rm dir}/d\eta$ is a smooth function of $dN_{\rm ch}/d\eta$ and can be well described as proportional to $(dN_{\rm ch}/d\eta)^\alpha$ with $\alpha{\sim}$1.25. This new scaling behavior holds for a wide range of beam energies at the Relativistic Heavy Ion Collider and Large Hadron Collider, for centrality selected samples, as well as for different, $A$$+$$A$ collision systems. At a given beam energy the scaling also holds for high $p_T$ ($>5$\,GeV/$c$) but when results from different collision energies are compared, an additional $\sqrt{s_{_{NN}}}$-dependent multiplicative factor is needed to describe the integrated-direct-photon yield.

We have measured direct photons for $p_T<5~$GeV/$c$ in minimum bias and 0\%--40\% most central events at midrapidity for Cu$+$Cu collisions at $\sqrt{s_{_{NN}}}=200$ GeV. The $e^{+}e^{-}$ contribution from quasi-real direct virtual photons has been determined as an excess over the known hadronic contributions in the $e^{+}e^{-}$ mass distribution. A clear enhancement of photons over the binary scaled $p$$+$$p$ fit is observed for $p_T<4$ GeV/$c$ in Cu$+$Cu data. The $p_T$ spectra are consistent with the Au$+$Au data covering a similar number of participants. The inverse slopes of the exponential fits to the excess after subtraction of the $p$$+$$p$ baseline are 285$\pm$53(stat)$\pm$57(syst)~MeV/$c$ and 333$\pm$72(stat)$\pm$45(syst)~MeV/$c$ for minimum bias and 0\%--40\% most central events, respectively. The rapidity density, $dN/dy$, of photons demonstrates the same power law as a function of $dN_{\rm ch}/d\eta$ observed in Au$+$Au at the same collision energy.

Fast parton probes produced by hard scattering and embedded within collisions of large nuclei have shown that partons suffer large energy loss and that the produced medium may respond collectively to the lost energy. We present measurements of neutral pion trigger particles at transverse momenta p^t_T = 4-12 GeV/c and associated charged hadrons (p^a_T = 0.5-7 GeV/c) as a function of relative azimuthal angle Delta Phi at midrapidity in Au+Au and p+p collisions at sqrt(s_NN) = 200 GeV. These data lead to two major observations. First, the relative angular distribution of low momentum hadrons, whose shape modification has been interpreted as a medium response to parton energy loss, is found to be modified only for p^t_T &lt; 7 GeV/c. At higher p^t_T, the data are consistent with unmodified or very weakly modified shapes, even for the lowest measured p^a_T. This observation presents a quantitative challenge to medium response scenarios. Second, the associated yield of hadrons opposite to the trigger particle in Au+Au relative to that in p+p (I_AA) is found to be suppressed at large momentum (IAA ~ 0.35-0.5), but less than the single particle nuclear modification factor (R_AA ~0.2).

The PHENIX collaboration at the Relativistic Heavy Ion Collider (RHIC) reports measurements of azimuthal dihadron correlations near midrapidity in $d$$+$Au collisions at $\sqrt{s_{_{NN}}}$=200 GeV. These measurements complement recent analyses by experiments at the Large Hadron Collider (LHC) involving central $p$$+$Pb collisions at $\sqrt{s_{_{NN}}}$=5.02 TeV, which have indicated strong anisotropic long-range correlations in angular distributions of hadron pairs. The origin of these anisotropies is currently unknown. Various competing explanations include parton saturation and hydrodynamic flow. We observe qualitatively similar, but larger, anisotropies in $d$$+$Au collisions compared to those seen in $p$$+$Pb collisions at the LHC. The larger extracted $v_2$ values in $d$$+$Au collisions at RHIC are consistent with expectations from hydrodynamic calculations owing to the larger expected initial-state eccentricity compared with that from $p$$+$Pb collisions. When both are divided by an estimate of the initial-state eccentricity the scaled anisotropies follow a common trend with multiplicity that may extend to heavy ion data at RHIC and the LHC, where the anisotropies are widely thought to arise from hydrodynamic flow.

Neutral-pion, pi^0, spectra were measured at midrapidity (|y|<0.35) in Au+Au collisions at sqrt(s_NN) = 39 and 62.4 GeV and compared to earlier measurements at 200 GeV in the 1<p_T<10 GeV/c transverse-momentum (p_T) range. The high-p_T tail is well described by a power law in all cases and the powers decrease significantly with decreasing center-of-mass energy. The change of powers is very similar to that observed in the corresponding p+p-collision spectra. The nuclear-modification factors (R_AA) show significant suppression and a distinct energy dependence at moderate p_T in central collisions. At high p_T, R_AA is similar for 62.4 and 200 GeV at all centralities. Perturbative-quantum-chromodynamics calculations that describe R_AA well at 200 GeV, fail to describe the 39 GeV data, raising the possibility that the relative importance of initial-state effects and soft processes increases at lower energies. A conclusion that the region where hard processes are dominant is reached only at higher p_T, is also supported by the x_T dependence of the x_T-scaling power-law exponent.

We present measurements of electrons and positrons from the semileptonic decays of heavy-flavor hadrons at midrapidity ($|y|<$ 0.35) in Au$+$Au collisions at $\sqrt{s_{_{NN}}}=62.4$ GeV. The data were collected in 2010 by the PHENIX experiment that included the new hadron-blind detector. The invariant yield of electrons from heavy-flavor decays is measured as a function of transverse momentum in the range $1<p_T^e<5$ GeV/$c$. The invariant yield per binary collision is slightly enhanced above the $p$$+$$p$ reference in Au$+$Au 0%--20%, 20%--40% and 40%--60% centralities at a comparable level. This may be a result of the interplay between initial-state Cronin effects, final-state flow, and energy loss for heavy-quark production at this low beam energy. The $v_2$ of electrons from heavy-flavor decays is nonzero when averaged between $1.3<p_T^e<2.5$ GeV/$c$ from $0<{\rm centrality}<40$% collisions at $\sqrt{s_{_{NN}}}=62.4$ GeV. For 20%--40% centrality collisions, the $v_2$ at $\sqrt{s_{_{NN}}}=62.4$ GeV is smaller than that for heavy flavor decays at $\sqrt{s_{_{NN}}}=200$ GeV. The $v_2$ of the electrons from heavy-flavor decay at the lower beam energy is also smaller than $v_2$ for pions. Both results indicate that the heavy-quarks interact with the medium formed in these collisions, but they may not be at the same level of thermalization with the medium as observed at $\sqrt{s_{_{NN}}}=200$ GeV.

Differential measurements of the elliptic (v_2) and hexadecapole (v_4) Fourier flow coefficients are reported for charged hadrons as a function of transverse momentum (p_T) and collision centrality or the number of participant nucleons (N_part) for Au+Au collisions at sqrt(s_NN)=200 GeV. The v_{2,4} measurements at pseudorapidity |\eta|<=0.35 obtained with four separate reaction plane detectors positioned in the range 1.0<|\eta|<3.9 show good agreement, indicating the absence of significant \eta-dependent nonflow perturbations. Sizable values for v_4(p_T) are observed with a ratio v_4(p_T,N_part)/v_2^2(p_T,N_part)~0.8 for 50<N_part<200, which is compatible with the combined effects of a finite viscosity and initial eccentricity fluctuations. For N_part>200 this ratio increases up to 1.7 in the most central collisions.

We present a detailed measurement of charged two-pion correlation functions in 0%-30% centrality $\sqrt{s_{_{NN}}}=200$ GeV Au$+$Au collisions by the PHENIX experiment at the Relativistic Heavy Ion Collider. The data are well described by Bose-Einstein correlation functions stemming from L\'evy-stable source distributions. Using a fine transverse momentum binning, we extract the correlation strength parameter $\lambda$, the L\'evy index of stability $\alpha$ and the L\'evy length scale parameter $R$ as a function of average transverse mass of the pair $m_T$. We find that the positively and the negatively charged pion pairs yield consistent results, and their correlation functions are represented, within uncertainties, by the same L\'evy-stable source functions. The $\lambda(m_T)$ measurements indicate a decrease of the strength of the correlations at low $m_T$. The L\'evy length scale parameter $R(m_T)$ decreases with increasing $m_T$, following a hydrodynamically predicted type of scaling behavior. The values of the L\'evy index of stability $\alpha$ are found to be significantly lower than the Gaussian case of $\alpha=2$, but also significantly larger than the conjectured value that may characterize the critical point of a second-order quark-hadron phase transition.

The PHENIX experiment at the Relativistic Heavy Ion Collider has measured low mass vector meson, $\omega$, $\rho$, and $\phi$, production through the dimuon decay channel at forward rapidity ($1.2<|y|<2.2$) in $p$$+$$p$ collisions at $\sqrt{s}=200$ GeV. The differential cross sections for these mesons are measured as a function of both $p_T$ and rapidity. We also report the integrated differential cross sections over $1<p_T<7$ GeV/$c$ and $1.2<|y|<2.2$: $d\sigma/dy(\omega+\rho\rightarrow\mu\mu) = 80 \pm 6 \mbox{(stat)} \pm 12 \mbox{(syst)}$ nb and $d\sigma/dy(\phi\rightarrow\mu\mu) = 27 \pm 3 \mbox{(stat)} \pm 4 \mbox{(syst)}$ nb. These results are compared with midrapidity measurements and calculations.

The azimuthal anisotropy coefficients v_2 and v_4 of pi^0 and eta mesons are measured in Au+Au collisions at sqrt(s_NN)=200 GeV, as a function of transverse momentum p_T (1-14 GeV/c) and centrality. The extracted v_2 coefficients are found to be consistent between the two meson species over the measured p_T range. The ratio of v_4/v_2^2 for pi^0 mesons is found to be independent of p_T for 1-9 GeV/c, implying a lack of sensitivity of the ratio to the change of underlying physics with p_T. Furthermore, the ratio of v_4/v_2^2 is systematically larger in central collisions, which may reflect the combined effects of fluctuations in the initial collision geometry and finite viscosity in the evolving medium.

The measurement of direct photons from Au$+$Au collisions at $\sqrt{s_{_{NN}}}=39$ and 62.4 GeV in the transverse-momentum range $0.4<p_T<3$ Gev/$c$ is presented by the PHENIX collaboration at the Relativistic Heavy Ion Collider. A significant direct-photon yield is observed in both collision systems. A universal scaling is observed when the direct-photon $p_T$ spectra for different center-of-mass energies and for different centrality selections at $\sqrt{s_{_{NN}}}=62.4$ GeV is scaled with $(dN_{\rm ch}/d\eta)^{\alpha}$ for $\alpha=1.21{\pm}0.04$. This scaling also holds true for direct-photon spectra from Au$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV measured earlier by PHENIX, as well as the spectra from Pb$+$Pb at $\sqrt{s_{_{NN}}}=2760$ GeV published by ALICE. The scaling power $\alpha$ seems to be independent of $p_T$, center of mass energy, and collision centrality. The spectra from different collision energies have a similar shape up to $p_T$ of 2 GeV/$c$. The spectra have a local inverse slope $T_{\rm eff}$ increasing with $p_T$ of $0.174\pm0.018$ GeV/$c$ in the range $0.4<p_T<1.3$ GeV/$c$ and increasing to $0.289\pm0.024$ GeV/$c$ for $0.9<p_T<2.1$ GeV/$c$. The observed similarity of low-$p_T$ direct-photon production from $\sqrt{s_{_{NN}}}= 39$ to 2760 GeV suggests a common source of direct photons for the different collision energies and event centrality selections, and suggests a comparable space-time evolution of direct-photon emission.

The PHENIX experiment has measured electrons and positrons at midrapidity from the decays of hadrons containing charm and bottom quarks produced in d+Au and p+p collisions at sqrt(s_NN)=200 GeV at the Relativistic Heavy Ion Collider, in the transverse-momentum range 0.85 < pT < 8.5 GeV/c. In central d+Au collisions, the nuclear modification factor R_dA at 1.5 < pT < 5 GeV/c displays evidence of enhancement of these electrons, relative to those produced in p+p collisions, and shows that the mass-dependent Cronin enhancement observed at RHIC extends to the heavy-D-meson family. A comparison with the neutral-pion data suggests that the difference in cold-nuclear-matter effects on light- and heavy-flavor mesons could contribute to the observed differences between the pi0 and heavy-flavor-electron nuclear modification factor R_AA.

Production of $\pi^0$ and $\eta$ mesons has been measured at midrapidity in Cu$+$Au collisions at $\sqrt{s_{_{NN}}}$=200 GeV. Measurements were performed in $\pi^0(\eta)\rightarrow\gamma\gamma$ decay channel in the 1(2)-20 GeV/$c$ transverse momentum range. A strong suppression is observed for $\pi^0$ and $\eta$ meson production at high transverse momentum in central Cu$+$Au collisions relative to the $p$$+$$p$ results scaled by the number of nucleon-nucleon collisions. In central collisions the suppression is similar to Au$+$Au with comparable nuclear overlap. The $\eta/\pi^0$ ratio measured as a function of transverse momentum is consistent with $m_T$-scaling parameterization down to $p_T=$2 GeV/$c$, its asymptotic value is constant and consistent with Au$+$Au and $p$$+$$p$ and does not show any significant dependence on collision centrality. Similar results were obtained in hadron-hadron, hadron-nucleus, and nucleus-nucleus collisions as well as in $e^+e^-$ collisions in a range of collision energies $\sqrt{s_{_{NN}}}=$3--1800 GeV. This suggests that the quark-gluon-plasma medium produced in Cu$+$Cu collisions either does not affect the jet fragmentation into light mesons or it affects the $\pi^0$ and $\eta$ the same way.

We present measurements of the J/psi invariant yields in sqrt(s_NN)=39 and 62.4 GeV Au+Au collisions at forward rapidity (1.2<|y|<2.2). Invariant yields are presented as a function of both collision centrality and transverse momentum. Nuclear modifications are obtained for central relative to peripheral Au+Au collisions (R_CP) and for various centrality selections in Au+Au relative to scaled p+p cross sections obtained from other measurements (R_AA). The observed suppression patterns at 39 and 62.4 GeV are quite similar to those previously measured at 200 GeV. This similar suppression presents a challenge to theoretical models that contain various competing mechanisms with different energy dependencies, some of which cause suppression and others enhancement.

The cross section of bottom quark-antiquark ($b\bar{b}$) production in $p$+$p$ collisions at $\sqrt{s}=510$ GeV is measured with the PHENIX detector at the Relativistic Heavy Ion Collider. The results are based on the yield of high mass, like-sign muon pairs measured within the PHENIX muon arm acceptance ($1.2<|y|<2.2$). The $b\bar{b}$ signal is extracted from like-sign dimuons by utilizing the unique properties of neutral $B$ meson oscillation. We report a differential cross section of $d\sigma_{b\bar{b}\rightarrow \mu^\pm\mu^\pm}/dy = 0.16 \pm 0.01~(\mbox{stat}) \pm 0.02~(\mbox{syst}) \pm 0.02~(\mbox{global})$ nb for like-sign muons in the rapidity and $p_T$ ranges $1.2<|y|<2.2$ and $p_T>1$ GeV/$c$, and dimuon mass of 5--10 GeV/$c^2$. The extrapolated total cross section at this energy for $b\bar{b}$ production is $13.1 \pm 0.6~(\mbox{stat}) \pm 1.5~(\mbox{syst}) \pm 2.7~(\mbox{global})~\mu$b. The total cross section is compared to a perturbative quantum chromodynamics calculation and is consistent within uncertainties. The azimuthal opening angle between muon pairs from $b\bar{b}$ decays and their $p_T$ distributions are compared to distributions generated using {\sc ps pythia 6}, which includes next-to-leading order processes. The azimuthal correlations and pair $p_T$ distribution are not very well described by {\sc pythia} calculations, but are still consistent within uncertainties. Flavor creation and flavor excitation subprocesses are favored over gluon splitting.

The PHENIX collaboration has measured high-$p_T$ dihadron correlations in $p$$+$$p$, $p$$+$Al, and $p$$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV. The correlations arise from inter- and intra-jet correlations and thus have sensitivity to nonperturbative effects in both the initial and final states. The distributions of $p_{\rm out}$, the transverse momentum component of the associated hadron perpendicular to the trigger hadron, are sensitive to initial and final state transverse momenta. These distributions are measured multi-differentially as a function of $x_E$, the longitudinal momentum fraction of the associated hadron with respect to the trigger hadron. The near-side $p_{\rm out}$ widths, sensitive to fragmentation transverse momentum, show no significant broadening between $p$$+$Au, $p$$+$Al, and $p$$+$$p$. The away-side nonperturbative $p_{\rm out}$ widths are found to be broadened in $p$$+$Au when compared to $p$$+$$p$; however, there is no significant broadening in $p$$+$Al compared to $p$$+$$p$ collisions. The data also suggest that the away-side $p_{\rm out}$ broadening is a function of $N_{\rm coll}$, the number of binary nucleon-nucleon collisions, in the interaction. The potential implications of these results with regard to initial and final state transverse momentum broadening and energy loss of partons in a nucleus, among other nuclear effects, are discussed.

Measurements of anisotropic flow Fourier coefficients ($v_n$) for inclusive charged particles and identified hadrons $\pi^{\pm}$, $K^{\pm}$, $p$, and $\bar{p}$ produced at midrapidity in Cu+Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV are presented. The data were collected in 2012 by the PHENIX experiment at the Relativistic Heavy Ion Collider (RHIC). The particle azimuthal distributions with respect to different order symmetry planes $\Psi_n$, for $n$~=~1, 2, and 3 are studied as a function of transverse momentum $p_T$ over a broad range of collisions centralities. Mass ordering, as expected from hydrodynamic flow, is observed for all three harmonics. The charged-particle results are compared to hydrodynamical and transport model calculations. We also compare these Cu$+$Au results with those in Cu$+$Cu and Au$+$Au collisions at the same $\sqrt{s_{_{NN}}}$, and find that the $v_2$ and $v_3$, as a function of transverse momentum, follow a common scaling with $1/(\varepsilon_n N_{\rm part}^{1/3})$.

We present measurements from the PHENIX experiment of large parity-violating single spin asymmetries of high transverse momentum electrons and positrons from $W^\pm/Z$ decays, produced in longitudinally polarized $p$$+$$p$ collisions at center of mass energies of $\sqrt{s}$=500 and 510~GeV. These asymmetries allow direct access to the anti-quark polarized parton distribution functions due to the parity-violating nature of the $W$-boson coupling to quarks and anti-quarks. The results presented are based on data collected in 2011, 2012, and 2013 with an integrated luminosity of 240 pb$^{-1}$, which exceeds previous PHENIX published results by a factor of more than 27. These high $Q^2$ data provide an important addition to our understanding of anti-quark parton helicity distribution functions.

We report on $J/\psi$ production from asymmetric Cu+Au heavy-ion collisions at $\sqrt{s_{_{NN}}}$=200 GeV at the Relativistic Heavy Ion Collider at both forward (Cu-going direction) and backward (Au-going direction) rapidities. The nuclear modification of $J/\psi$ yields in Cu$+$Au collisions in the Au-going direction is found to be comparable to that in Au$+$Au collisions when plotted as a function of the number of participating nucleons. In the Cu-going direction, $J/\psi$ production shows a stronger suppression. This difference is comparable in magnitude and has the same sign as the difference expected from shadowing effects due to stronger low-$x$ gluon suppression in the larger Au nucleus. The relative suppression is opposite to that expected from hot nuclear matter dissociation, since a higher energy density is expected in the Au-going direction.

The PHENIX experiment has measured the spin alignment for inclusive $J/\psi\rightarrow e^{+}e^{-}$ decays in $p$+$p$ collisions at $\sqrt{s}=510$ GeV at midrapidity. The angular distributions have been measured in three different polarization frames, and the three decay angular coefficients have been extracted in a full two-dimensional analysis. Previously, PHENIX saw large longitudinal net polarization at forward rapidity at the same collision energy. This analysis at midrapidity, complementary to the previous PHENIX results, sees no sizable polarization in the measured transverse momentum range of $0.0<p_T<10.0$ GeV/$c$. The results are consistent with a previous one-dimensional analysis at midrapidity at $\sqrt{s}=200$ GeV. The transverse-momentum-dependent cross section for midrapidity $J/\psi$ production has additionally been measured, and after comparison to world data we find a simple logarithmic dependence of the cross section on $\sqrt{s}$.

We report the first measurement of the fraction of $J/\psi$ mesons coming from $B$-meson decay ($F_{B{\rightarrow}J/\psi}$) in $p$+$p$ collisions at $\sqrt{s}=$ 510 GeV. The measurement is performed using the forward silicon vertex detector and central vertex detector at PHENIX, which provide precise tracking and distance-of-closest-approach determinations, enabling the statistical separation of $J/\psi$ due to $B$-meson decays from prompt $J/\psi$. The measured value of $F_{B{\rightarrow}J/\psi}$ is 8.1\%$\pm$2.3\% (stat)$\pm$1.9\% (syst) for $J/\psi$ with transverse momenta $0<p_T<5$ GeV/$c$ and rapidity $1.2<|y|<2.2$. The measured fraction $F_{B{\rightarrow}J/\psi}$ at PHENIX is compared to values measured by other experiments at higher center of mass energies and to fixed-order-next-to-leading-logarithm and color-evaporation-model predictions. The $b\bar{b}$ cross section per unit rapidity ($d\sigma/dy(pp{\rightarrow}b\bar{b})$) extracted from the obtained $F_{B{\rightarrow}J/\psi}$ and the PHENIX inclusive $J/\psi$ cross section measured at 200 GeV scaled with color-evaporation-model calculations, at the mean $B$ hadron rapidity $y={\pm}1.7$ in 510 GeV $p$$+$$p$ collisions, is $3.63^{+1.92}_{-1.70}\mu$b, and it is consistent with the fixed-order-next-to-leading-logarithm calculations.

The PHENIX experiment at the Relativistic Heavy Ion Collider measured $\pi^0$ and $\eta$ mesons at midrapidity in U$+$U collisions at $\sqrt{s_{_{NN}}}=192$ GeV in a wide transverse momentum range. Measurements were performed in the $\pi^0(\eta)\rightarrow\gamma\gamma$ decay modes. A strong suppression of $\pi^0$ and $\eta$ meson production at high transverse momentum was observed in central U$+$U collisions relative to binary scaled $p$$+$$p$ results. Yields of $\pi^0$ and $\eta$ mesons measured in U$+$U collisions show similar suppression pattern to the ones measured in Au$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV for similar numbers of participant nucleons. The $\eta$/$\pi^0$ ratios do not show dependence on centrality or transverse momentum, and are consistent with previously measured values in hadron-hadron, hadron-nucleus, nucleus-nucleus, and $e^+e^-$ collisions.

The PHENIX experiment at RHIC has measured the centrality dependence of the direct photon yield from Au$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV down to $p_T=0.4$ GeV/$c$. Photons are detected via photon conversions to $e^+e^-$ pairs and an improved technique is applied that minimizes the systematic uncertainties that usually limit direct photon measurements, in particular at low $p_T$. We find an excess of direct photons above the $N_{\rm coll}$-scaled yield measured in $p$$+$$p$ collisions. This excess yield is well described by an exponential distribution with an inverse slope of about 240 MeV/$c$ in the $p_T$ range from 0.6--2.0 GeV/$c$. While the shape of the $p_T$ distribution is independent of centrality within the experimental uncertainties, the yield increases rapidly with increasing centrality, scaling approximately with $N_{\rm part}^\alpha$, where $\alpha=1.48{\pm}0.08({\rm stat}){\pm}0.04({\rm syst})$.

The PHENIX experiment at the Relativistic Heavy Ion Collider has measured 2nd and 3rd order Fourier coefficients of the azimuthal distributions of direct photons emitted at midrapidity in Au$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV for various collision centralities. Combining two different analysis techniques, results were obtained in the transverse momentum range of $0.4<p_{T}<4.0$ GeV/$c$. At low $p_T$ the second-order coefficients, $v_2$, are similar to the ones observed in hadrons. Third order coefficients, $v_3$, are nonzero and almost independent of centrality. These new results on $v_2$ and $v_3$, combined with previously published results on yields, are compared to model calculations that provide yields and asymmetries in the same framework. Those models are challenged to explain simultaneously the observed large yield and large azimuthal anisotropies.

We present a systematic study of charged pion and kaon interferometry in Au$+$Au collisions at $\sqrt{s_{_{NN}}}$=200 GeV. The kaon mean source radii are found to be larger than pion radii in the outward and longitudinal directions for the same transverse mass; this difference increases for more central collisions. The azimuthal-angle dependence of the radii was measured with respect to the second-order event plane and similar oscillations of the source radii were found for pions and kaons. Hydrodynamic models qualitatively describe the similar oscillations of the mean source radii for pions and kaons, but they do not fully describe the transverse-mass dependence of the oscillations.

We present measured J/psi production rates in d+Au collisions at sqrt(s_NN) = 200 GeV over a broad range of transverse momentum (p_T=0-14 GeV/c) and rapidity (-2.2<y<2.2). We construct the nuclear-modification factor R_dAu for these kinematics and as a function of collision centrality (related to impact parameter for the R_dAu collision). We find that the modification is largest for collisions with small impact parameters, and observe a suppression (R_dAu<1) for p_T<4 GeV/c at positive rapidities. At negative rapidity we observe a suppression for p_T<2 GeV/c then an enhancement (R_dAu>1) for p_T>2 GeV/c. The observed enhancement at negative rapidity has implications for the observed modification in heavy-ion collisions at high p_T.

We report $e^\pm-\mu^\mp$ pair yield from charm decay measured between midrapidity electrons ($|\eta|<0.35$ and $p_T>0.5$ GeV/$c$) and forward rapidity muons ($1.4<\eta<2.1$ and $p_T>1.0$ GeV/$c$) as a function of $\Delta\phi$ in both $p$$+$$p$ and in $d$+Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV. Comparing the $p$$+$$p$ results with several different models, we find the results are consistent with a total charm cross section $\sigma_{c\bar{c}} =$ 538 $\pm$ 46 (stat) $\pm$ 197 (data syst) $\pm$ 174 (model syst) $\mu$b. These generators also indicate that the back-to-back peak at $\Delta\phi = \pi$ is dominantly from the leading order contributions (gluon fusion), while higher order processes (flavor excitation and gluon splitting) contribute to the yield at all $\Delta\phi$. We observe a suppression in the pair yield per collision in $d$+Au. We find the pair yield suppression factor for $2.7<\Delta\phi<3.2$ rad is $J_{dA}$ = 0.433 $\pm$ 0.087 (stat) $\pm$ 0.135 (syst), indicating cold nuclear matter modification of $c\bar{c}$ pairs.

We report on the first measurement of double-spin asymmetry, A_LL, of electrons from the decays of hadrons containing heavy flavor in longitudinally polarized p+p collisions at sqrt(s)=200 GeV for p_T= 0.5 to 3.0 GeV/c. The asymmetry was measured at mid-rapidity (|eta|<0.35) with the PHENIX detector at the Relativistic Heavy Ion Collider. The measured asymmetries are consistent with zero within the statistical errors. We obtained a constraint for the polarized gluon distribution in the proton of |Delta g/g(log{_10}x= -1.6^+0.5_-0.4, {mu}=m_T^c)|^2 < 0.033 (1 sigma), based on a leading-order perturbative-quantum-chromodynamics model, using the measured asymmetry.

The PHENIX experiment at the Relativistic Heavy Ion Collider has measured the differential cross section, mean transverse momentum, mean transverse momentum squared of inclusive $J/\psi$ and cross-section ratio of $\psi(2S)$ to $J/\psi$ at forward rapidity in \pp collisions at \sqrts = 510 GeV via the dimuon decay channel. Comparison is made to inclusive $J/\psi$ cross sections measured at \sqrts = 200 GeV and 2.76--13 TeV. The result is also compared to leading-order nonrelativistic QCD calculations coupled to a color-glass-condensate description of the low-$x$ gluons in the proton at low transverse momentum ($p_T$) and to next-to-leading order nonrelativistic QCD calculations for the rest of the $p_T$ range. These calculations overestimate the data at low $p_T$. While consistent with the data within uncertainties above $\approx3$ GeV/$c$, the calculations are systematically below the data. The total cross section times the branching ratio is BR $d\sigma^{J/\psi}_{pp}/dy (1.2<|y|<2.2, 0<p_T<10~\mbox{GeV/$c$}) =$ 54.3 $\pm$ 0.5 (stat) $\pm$ 5.5 (syst) nb.

In 2015, the PHENIX collaboration has measured very forward ($\eta>6.8$) single-spin asymmetries of inclusive neutrons in transversely polarized proton-proton and proton-nucleus collisions at a center of mass energy of 200 GeV. A previous publication from this data set concentrated on the nuclear dependence of such asymmetries. In this measurement the explicit transverse-momentum dependence of inclusive neutron single spin asymmetries for proton-proton collisions is extracted using a bootstrapping-unfolding technique on the transverse momenta. This explicit transverse-momentum dependence will help improve the understanding of the mechanisms that create these asymmetries.

The PHENIX experiment has measured the production of neutral pions in Au+Au collisions at sqrt(s_NN)=200 GeV. The new data offer a fourfold increase in recorded luminosity, providing higher precision and a larger reach in transverse momentum, p_T, to 20 GeV/c. The production ratio of eta/pi^0 is 0.46+/-0.01(stat)+/-0.05(syst), constant with p_T and collision centrality. The observed ratio is consistent with earlier measurements, as well as with the p+p and d+Au values. The production of pi^0 is suppressed by a factor of 5, as in earlier findings. However, with the improved statistical precision a small but significant rise of the nuclear modification factor, R_AA, vs p_T, with a slope of 0.0106+/-^(0.0034)_(0.0029)[GeV/c]^-1, is discernible in central collisions. A phenomenological extraction of the average fractional parton energy loss shows a decrease with increasing p_T. To study the path length dependence of suppression, the pi^0 yield was measured at different angles with respect to the event plane; a strong azimuthal dependence of the pi^0 R_AA is observed. The data are compared to theoretical models of parton energy loss as a function of the path length, L, in the medium. Models based on pQCD are insufficient to describe the data, while a hybrid model utilizing pQCD for the hard interactions and AdS/CFT for the soft interactions is consistent with the data.

The transverse momentum (p_T) spectra and ratios of identified charged hadrons (\pi^+/-, K^+/-, p, p^bar) produced in sqrt(s_NN)=200 GeV Au+Au and d+Au collisions are reported in five different centrality classes for each collision species. The measurements of pions and protons are reported up to p_T=6 GeV/c (5 GeV/c), and the measurements of kaons are reported up to p_T=4 GeV/c (3.5 GeV/c) in Au+Au (d+Au) collisions. In the intermediate p_T region, between 2--5 GeV/c, a significant enhancement of baryon to meson ratios compared to those measured in p+p collisions is observed. This enhancement is present in both Au+Au and d+Au collisions, and increases as the collisions become more central. We compare a class of peripheral Au+Au collisions with a class of central d+Au collisions which have a comparable number of participating nucleons and binary nucleon-nucleon collisions. The p_T dependent particle ratios for these classes display a remarkable similarity, which is then discussed.

We report a measurement of $e^+e^-$ pairs from semileptonic heavy-flavor decays in $d$$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV. Exploring the mass and transverse-momentum dependence of the yield, the bottom decay contribution can be isolated from charm, and quantified by comparison to {\sc pythia} and {\sc mc@nlo} simulations. The resulting $b\bar{b}$-production cross section is $\sigma^{d{\rm Au}}_{b\bar{b}}=1.37{\pm}0.28({\rm stat}){\pm}0.46({\rm syst})$~mb, which is equivalent to a nucleon-nucleon cross section of $\sigma^{NN}_{bb}=3.4\pm0.8({\rm stat}){\pm}1.1({\rm syst})\ \mu$b.

We present results for three charmonia states (psi^prime, chi_c and J/psi) in d+Au collisions at |y|<0.35 and sqrt(s_NN)=200 GeV. We find that the modification of the psi^prime yield relative to that of the J/psi scales approximately with charged-particle multiplicity at midrapidity across p+A, d+Au, and A+A results from the Super Proton Synchrotron and the Relativistic Heavy Ion Collider. In large impact-parameter collisions we observe a similar suppression for the psi^prime and J/psi, while in small impact-parameter collisions the more weakly bound psi^prime is more strongly suppressed. Owing to the short time spent traversing the Au nucleus, the larger psi^prime suppression in central events is not explained by an increase of the nuclear absorption due to meson formation time effects.

Back-to-back hadron pair yields in d+Au and p+p collisions at sqrt(s_NN)=200 GeV were measured with the PHENIX detector at the Relativistic Heavy Ion Collider. Rapidity separated hadron pairs were detected with the trigger hadron at pseudorapidity |eta|<0.35 and the associated hadron at forward rapidity (deuteron direction, 3.0<eta<3.8). Pairs were also detected with both hadrons measured at forward rapidity; in this case the yield of back-to-back hadron pairs in d+Au collisions with small impact parameters is observed to be suppressed by a factor of 10 relative to p+p collisions. The kinematics of these pairs is expected to probe partons in the Au nucleus with low fraction x of the nucleon momenta, where the gluon densities rise sharply. The observed suppression as a function of nuclear thickness, p_T, and eta points to cold nuclear matter effects arising at high parton densities.