$R_{AA}$ for $\phi$ integrated at $p_T$ > 2.2 GeV/$c$ in Cu+Cu and Au+Au collisions vs. $N_{part}$. The global uncertainty related to the $p$+$p$ reference normalization is shown as a box on the right in the figure from the paper.

$R_{AA}$ for $\phi$ integrated at $p_T$ > 2.2 GeV/$c$ in Cu+Cu and Au+Au collisions vs. $N_{part}$. The global uncertainty related to the $p$+$p$ reference normalization is shown as a box on the right in the figure from the paper.

$R_{dA}$ vs. $p_T$ for $\phi$, $\pi^0$, and ($p$+$\bar{p}$) for 0-20% centrality $d$+Au collisions, and $R_{dA}$ vs. $p_T$ for $\phi$, $\pi^0$, and ($p$+$\bar{p}$) for 60-88% peripheral $d$+Au collisions. The global uncertainty of ~ 10% related to the $p$+$p$ reference normalization is not shown.

Transverse single-spin asymmetry of $J/\psi$ mesons plotted against $J/\psi$ transverse momentum. Systematic uncertainties $\delta$$A^f_N$ Type B and $\delta$$A^P_N$ Type B are due to the geometric scale factor and the polarization, respectively.

Transverse single-spin asymmetry of $J/\psi$ mesons plotted against $J/\psi$ transverse momentum. Systematic uncertainties $\delta$$A^f_N$ Type B and $\delta$$A^P_N$ Type B are due to the geometric scale factor and the polarization, respectively.

Transverse single-spin asymmetry of $J/\psi$ mesons plotted against $J/\psi$ transverse momentum. Systematic uncertainties $\delta$$A^f_N$ Type B and $\delta$$A^P_N$ Type B are due to the geometric scale factor and the polarization, respectively.

Forward-rapidity $J/\psi$ —> $\mu^+\mu^-$ $d$+Au Nuclear Dependence at $\sqrt{s}$ = 200 GeV. (sys. A, B systematics are relative, i.e. they multiply the $R_{dAu}$ value. The sysA uncertainty includes statistical uncertainties as well as point-to-point uncorrelated systematics, sys. B represents uncertainties that are correlated from point to point, and sys. C represents uncertainties in the overall normalization.)

Mid rapidity $d$+Au —> $e^+e^-$ $J/\psi$ $R_{dAu}$ at $\sqrt{s}$=200 GeV. (Sys. A, B systematics are absolute, i.e. they add/subtract directly from $R_{dAu}$. The sys. A uncertainty includes statistical uncertainties as well as point-to-point uncorrelated systematics, sys. B represents uncertainties that are correlated from point to point, and sys. C represents uncertainties in the overall normalization.)

$d$+Au vs centrality vs $y$. (All uncertainties are absolute. The sys. A uncertainty includes both the statistical uncertainty and the point-to-point uncorrelated systematic, sys. B represents uncertainties that are correlated from point to point, and sys. C represents uncertainties in the overall normalization.)

Forward-rapidity $J/\psi$ —> $\mu^+\mu^-$ $d$+Au Nuclear Dependence at $\sqrt{s}$ = 200 GeV. (sys. A, B systematics are relative, i.e. they multiply the $R_{dAu}$ value. The sysA uncertainty includes statistical uncertainties as well as point-to-point uncorrelated systematics, sys. B represents uncertainties that are correlated from point to point, and sys. C represents uncertainties in the overall normalization.)

Mid rapidity $d$+Au —> $e^+e^-$ $J/\psi$ $R_{dAu}$ at $\sqrt{s}$=200 GeV. (Sys. A, B systematics are absolute, i.e. they add/subtract directly from $R_{dAu}$. The sys. A uncertainty includes statistical uncertainties as well as point-to-point uncorrelated systematics, sys. B represents uncertainties that are correlated from point to point, and sys. C represents uncertainties in the overall normalization.)

Forward-rapidity $J/\psi$ —> $\mu^+\mu^-$ $d$+Au Nuclear Dependence at $\sqrt{s}$ = 200 GeV. (sys. A, B systematics are relative, i.e. they multiply the $R_{CP}$ value. The sys. A uncertainty includes statistical uncertainties as well as point-to-point uncorrelated systematics, sys. B represents uncertainties that are correlated from point to point, and sys. C represents uncertainties in the overall normalization.)

Mid rapidity $d$+Au —> $e^+e^-$ $J/\psi$ $R_{CP}$ at $\sqrt{s}$=200 GeV. (Sys. A, B systematics are absolute, i.e. they add/subtract directly from $R_{CP}$. The sys. A uncertainty includes statistical uncertainties as well as point-to-point uncorrelated systematics, sys. B represents uncertainties that are correlated from point to point, and sys. C represents uncertainties in the overall normalization.)

$\psi^{\prime}(J/\psi)$ dielectron yield ratio measured at $|y|$ < 0.35 followed by point-to-point uncorrelated (uncorr.) (statistical and uncorrelated systematic uncertainties) and correlated systematic (corr.) uncertainties.

$J/\psi$ counts obtained from the dimuon decay analysis of four different data sets, determined using the fit function. The S and N following 2006 and 2008 indicate the data sets for the south and north forward arms.

$J/\psi$ counts obtained from the dimuon decay analysis of four different data sets, determined using the fit function. The S and N following 2006 and 2008 indicate the data sets for the south and north forward arms.

Transverse momentum dependence of $J/\psi$ and $\psi^{\prime}$ yields in $|y|$ < 0.35, and ${\psi^{\prime}}/{J/\psi}$ ratio together with ratios obtained in other experiments. Uncertainties are point-to-point uncorrelated (uncorr.) (statistical and uncorrelated systematic uncertainties) and correlated systematic (corr.) uncertainties. The global uncertainty is 10%.

Transverse momentum dependence of $J/\psi$ and $\psi^{\prime}$ yields in $|y|$ < 0.35, and ${\psi^{\prime}}/{J/\psi}$ ratio together with ratios obtained in other experiments. Uncertainties are point-to-point uncorrelated (uncorr.) (statistical and uncorrelated systematic uncertainties) and correlated systematic (corr.) uncertainties. The global uncertainty is 10%.

Transverse momentum dependence of $J/\psi$ and $\psi^{\prime}$ yields in $|y|$ < 0.35, and ${\psi^{\prime}}/{J/\psi}$ ratio together with ratios obtained in other experiments. Uncertainties are point-to-point uncorrelated (uncorr.) (statistical and uncorrelated systematic uncertainties) and correlated systematic (corr.) uncertainties. The global uncertainty is 10%.

Transverse momentum dependence of the $J/\psi$ dimuon differential cross section obtained in the muon arms in 2006 and 2008 Runs. Uncertainties are point-to-point uncorrelated (uncorr.) (statistical and uncorrelated systematic uncertainties) and correlated systematic (corr.) uncertainties. The global uncertainty is 10%.

Rapidity dependence of the $J/\psi$ yield combining dielectron ($|y|$ < 0.35 - full squares) with dimuon channels (1.2 < $|y|$ < 2.4 - full circles) along with the fits used to estimate the total cross section. Uncertainties are point-to-point uncorrelated (uncorr.) (statistical and uncorrelated systematic uncertainties) and correlated systematic (corr.) uncertainties. The global uncertainty is 10%.

$J_{dA}$ versus $x^{frag}_{Au}$ for $d$+Au collisions at $\sqrt{s_{NN}}$ = 200 GeV for different centrality classes.

$J_{dA}$ versus $x^{frag}_{Au}$ for $d$+Au collisions at $\sqrt{s_{NN}}$ = 200 GeV for different centrality classes.

$J_{dA}$ versus $x^{frag}_{Au}$ for $d$+Au collisions at $\sqrt{s_{NN}}$ = 200 GeV for different centrality classes.

$p_T$ versus $R_{dA}$ for $\pi^0$ and range of 3.0 < $\eta$ < 3.8.

PHENIX $\pi^0$ invariant cross-section for $p$+$p$ collisions for range 3.0 < $\eta$ < 3.8.

Invariant transverse momentum spectra of $\omega$ production in $p$+$p$ and $d$+Au collisions at $\sqrt{s}$=200 GeV.

Invariant transverse momentum spectra of $\omega$ production in $p$+$p$ and $d$+Au collisions at $\sqrt{s}$=200 GeV.

Invariant transverse momentum spectra of $\omega$ production in Cu+Cu (left) and Au+Au (right) collisions from the $\omega \rightarrow \pi^0 \gamma$ decay channel for three centrality bins and minimum bias.

Invariant transverse momentum spectra of $\omega$ production in Cu+Cu (left) and Au+Au (right) collisions from the $\omega \rightarrow \pi^0 \gamma$ decay channel for three centrality bins and minimum bias.

Invariant transverse momentum spectra of $\omega$ production in Cu+Cu (left) and Au+Au (right) collisions from the $\omega \rightarrow \pi^0 \gamma$ decay channel for three centrality bins and minimum bias.

Invariant transverse momentum spectra of $\omega$ production in Cu+Cu (left) and Au+Au (right) collisions from the $\omega \rightarrow \pi^0 \gamma$ decay channel for three centrality bins and minimum bias.

Invariant transverse momentum spectra of $\omega$ production in Cu+Cu (left) and Au+Au (right) collisions from the $\omega \rightarrow \pi^0 \gamma$ decay channel for three centrality bins and minimum bias.

Invariant transverse momentum spectra of $\omega$ production in Cu+Cu (left) and Au+Au (right) collisions from the $\omega \rightarrow \pi^0 \gamma$ decay channel for three centrality bins and minimum bias.

Measured ${\omega}/{\pi}$ ratio as a function of $p_T$ in $p$ + $p$ collisions at $\sqrt{s}$=200 GeV.

Measured ${\omega}/{\pi}$ ratio as a function of $p_T$ in $p$ + $p$ collisions at $\sqrt{s}$=200 GeV.

Measured ${\omega}/{\pi}$ ratio as a function of $p_T$ in $p$ + $p$ collisions at $\sqrt{s}$=200 GeV.

${\omega}/{\pi}$ ratio versus transverse momentum in $d$+Au (0–88%) for $\omega \rightarrow {e}^{+}{e}^{-}$.

${\omega}/{\pi}$ ratio versus transverse momentum in $d$+Au (0–88%) for $\omega \rightarrow {\pi}^{+}{\pi}^{-}\pi^0$.

${\omega}/{\pi}$ ratio versus transverse momentum in $d$+Au (0–88%) for $\omega \rightarrow {\pi}^{0}\gamma$.

${\omega}/{\pi}$ ratio versus transverse momentum in Cu+Cu (0–94%) for $\omega \rightarrow {\pi}^{0}\gamma$.

${\omega}/{\pi}$ ratio versus transverse momentum in Au+Au (0–92%) for $\omega \rightarrow {\pi}^{0}\gamma$.

${\omega}/{\pi}$ ratio versus transverse momentum in Au+Au (0–92%) for $\omega \rightarrow {\pi}^{0}\gamma$.

Nuclear modification factor, RdAu, measured for the ${R}_{dAu}$ in 0–88, 0–20, 20-40, and 40-60% centrality bins in $d$+Au collisions at $\sqrt{s}$=200 GeV.

Nuclear modification factor, RdAu, measured for the ${R}_{dAu}$ in 60–88% centrality bins in $d$+Au collisions at $\sqrt{s}$=200 GeV.

Nuclear modification factor, RdAu, measured for the ${R}_{dAu}$ in 0–88, 20-40, and 40–60% centrality bins in $d$+Au collisions at $\sqrt{s}$=200 GeV.

Nuclear modification factor, RdAu, measured for the ${R}_{dAu}$ in 0–20 and 60–88% centrality bins in $d$+Au collisions at $\sqrt{s}$=200 GeV.

Nuclear modification factor, RdAu, measured for the ${R}_{dAu}$ in 0–88, 0–20, 20-40, 40-60, and 60–88% centrality bins in $d$+Au collisions at $\sqrt{s}$=200 GeV.

$R_{AA}$ of the $\omega$ in Cu+Cu collisions from the $\omega \rightarrow \pi^0\gamma$ decay channel.

$R_{AA}$ of the $\omega$ in Au+Au collisions from the $\omega \rightarrow \pi^0 \gamma$ decay channel.

$R_{AA}$ of the $\omega$ in Au+Au collisions from the $\omega \rightarrow \pi^0 \gamma$ decay channel.

$R_{AA}$ of the $\omega$ in Au+Au collisions from the $\omega \rightarrow \pi^0 \gamma$ decay channel.

$R_{AA}$ of the $\omega$ in Au+Au collisions from the $\omega \rightarrow \pi^0 \gamma$ decay channel.

$R_{AA}$ of the $\omega$ in and Au+Au collisions from the $\omega \rightarrow \pi^0 \gamma$ decay channel.

($R_{AA}$) of the $\omega \rightarrow \pi^+\pi^-\pi^0$ collision for the $\omega$ meson integrated over the range $p_T$ > 7 $\mathrm{GeV}$/$c$ as a function of the number participating nucleons ($N_{part}$).

($R_{AA}$) of the $\omega \rightarrow \pi^0 \gamma$ collision for the $\omega$ meson integrated over the range $p_T$ > 7 $\mathrm{GeV}$/$c$ as a function of the number participating nucleons ($N_{part}$).

$R_{AA}$ of the $\omega \rightarrow \pi^0 \gamma$ collision for the $\omega$ meson integrated over the range $p_T$ > 7 $\mathrm{GeV}$/$c$ as a function of the number participating nucleons ($N_{part}$).

INVARIANT YIELDS

RAA

RAA

RAA

RAA

pT AVERAGE RAA

Sloss

Sloss

Sloss

n_eff(xT)

n_eff(xT)

n_eff(xT)

n_eff(xT)

$J/\psi$ invariant yield as a function of $p_T$ for each centrality at $|y|$ < 0.35. The type C systematic uncertainty for each distribution is given as a percentage in the legend. Type A represents uncertainties that are uncorrelated from point to point, Type B represents uncertainties that are correlated from point to point, and Type C represents uncertainties in the overall normalization.

$J/\psi$ invariant yield as a function of $p_T$ for each centrality at $|y|$ < 0.35. The type C systematic uncertainty for each distribution is given as a percentage in the legend. Type A represents uncertainties that are uncorrelated from point to point, Type B represents uncertainties that are correlated from point to point, and Type C represents uncertainties in the overall normalization.

$J/\psi$ invariant yield as a function of $p_T$ for each centrality at $|y|$ < 0.35. The type C systematic uncertainty for each distribution is given as a percentage in the legend. Type A represents uncertainties that are uncorrelated from point to point, Type B represents uncertainties that are correlated from point to point, and Type C represents uncertainties in the overall normalization.

$J/\psi$ invariant yield as a function of $p_T$ for each centrality at $|y|$ < 0.35. The type C systematic uncertainty for each distribution is given as a percentage in the legend. Type A represents uncertainties that are uncorrelated from point to point, Type B represents uncertainties that are correlated from point to point, and Type C represents uncertainties in the overall normalization.

$J/\psi$ invariant yield as a function of $p_T$ for each centrality for −2.2 < $y$ < −1.2. The type C systematic uncertainty for each distribution is given as a percentage in the legend. Type A represents uncertainties that are uncorrelated from point to point, Type B represents uncertainties that are correlated from point to point, and Type C represents uncertainties in the overall normalization.

$J/\psi$ invariant yield as a function of $p_T$ for each centrality for −2.2 < $y$ < −1.2. The type C systematic uncertainty for each distribution is given as a percentage in the legend. Type A represents uncertainties that are uncorrelated from point to point, Type B represents uncertainties that are correlated from point to point, and Type C represents uncertainties in the overall normalization.

$J/\psi$ invariant yield as a function of $p_T$ for each centrality for −2.2 < $y$ < −1.2. The type C systematic uncertainty for each distribution is given as a percentage in the legend. Type A represents uncertainties that are uncorrelated from point to point, Type B represents uncertainties that are correlated from point to point, and Type C represents uncertainties in the overall normalization.

$J/\psi$ invariant yield as a function of $p_T$ for each centrality for −2.2 < $y$ < −1.2. The type C systematic uncertainty for each distribution is given as a percentage in the legend. Type A represents uncertainties that are uncorrelated from point to point, Type B represents uncertainties that are correlated from point to point, and Type C represents uncertainties in the overall normalization.

$J/\psi$ invariant yield as a function of $p_T$ for each centrality for −2.2 < $y$ < −1.2. The type C systematic uncertainty for each distribution is given as a percentage in the legend. Type A represents uncertainties that are uncorrelated from point to point, Type B represents uncertainties that are correlated from point to point, and Type C represents uncertainties in the overall normalization.

$J/\psi$ invariant yield as a function of $p_T$ for each centrality for −2.2 < $y$ < −1.2. The type C systematic uncertainty for each distribution is given as a percentage in the legend. Type A represents uncertainties that are uncorrelated from point to point, Type B represents uncertainties that are correlated from point to point, and Type C represents uncertainties in the overall normalization.

$J/\psi$ invariant yield as a function of $p_T$ for each centrality for −2.2 < $y$ < −1.2. The type C systematic uncertainty for each distribution is given as a percentage in the legend. Type A represents uncertainties that are uncorrelated from point to point, Type B represents uncertainties that are correlated from point to point, and Type C represents uncertainties in the overall normalization.

$J/\psi$ invariant yield as a function of $p_T$ for each centrality for −2.2 < $y$ < −1.2. The type C systematic uncertainty for each distribution is given as a percentage in the legend. Type A represents uncertainties that are uncorrelated from point to point, Type B represents uncertainties that are correlated from point to point, and Type C represents uncertainties in the overall normalization.

$J/\psi$ nuclear modification factor, $R_{dAu}$, as a function of $p_T$ for (a) backward rapidity 0–100% centrality integrated $d$+Au collisions. Type A represents uncertainties that are uncorrelated from point to point, Type B represents uncertainties that are correlated from point to point, and Type C represents uncertainties in the overall normalization.

$J/\psi$ nuclear modification factor, $R_{dAu}$, as a function of $p_T$ for (b) midrapidity 0–100% centrality integrated $d$+Au collisions. Type A represents uncertainties that are uncorrelated from point to point, Type B represents uncertainties that are correlated from point to point, and Type C represents uncertainties in the overall normalization.

$J/\psi$ nuclear modification factor, $R_{dAu}$, as a function of $p_T$ for (c) forward rapidity 0–100% centrality integrated $d$+Au collisions. Type A represents uncertainties that are uncorrelated from point to point, Type B represents uncertainties that are correlated from point to point, and Type C represents uncertainties in the overall normalization.

$J/\psi$ —> $\mu^+\mu^-$ $R_{dAu}$, as a function of $p_T$ for a) central events at −2.2 < $y$ < −1.2. Type A represents uncertainties that are uncorrelated from point to point, Type B represents uncertainties that are correlated from point to point, and Type C represents uncertainties in the overall normalization.

$J/\psi$ —> $\mu^+\mu^-$ $R_{dAu}$, as a function of $p_T$ for b) midcentral events at −2.2 < $y$ < −1.2. Type A represents uncertainties that are uncorrelated from point to point, Type B represents uncertainties that are correlated from point to point, and Type C represents uncertainties in the overall normalization.

$J/\psi$ —> $\mu^+\mu^-$ $R_{dAu}$, as a function of $p_T$ for c) midperipheral events at −2.2 < $y$ < −1.2. Type A represents uncertainties that are uncorrelated from point to point, Type B represents uncertainties that are correlated from point to point, and Type C represents uncertainties in the overall normalization.

$J/\psi$ —> $\mu^+\mu^-$ $R_{dAu}$, as a function of $p_T$ for d) peripheral events at −2.2 < $y$ < −1.2. The 60–88% $R_{dAu}$ point at $p_T$ = 5.75 GeV/$c$ has been left off the figure, as it is above the plotted range and has very large uncertainties, however it is included in the table. Type A represents uncertainties that are uncorrelated from point to point, Type B represents uncertainties that are correlated from point to point, and Type C represents uncertainties in the overall normalization.

$J/\psi$ —> $e^+e^-$ $R_{dAu}$, as a function of $p_T$ for a) central, b) midcentral, c) midperipheral, and d) peripheral events at $|y|$ < 0.35. Type A represents uncertainties that are uncorrelated from point to point, Type B represents uncertainties that are correlated from point to point, and Type C represents uncertainties in the overall normalization.

$J/\psi$ —> $\mu^+\mu^-$ $R_{dAu}$, as a function of $p_T$ for a) central events at 1.2 < $y$ < 2.2. Type A represents uncertainties that are uncorrelated from point to point, Type B represents uncertainties that are correlated from point to point, and Type C represents uncertainties in the overall normalization.

$J/\psi$ —> $\mu^+\mu^-$ $R_{dAu}$, as a function of $p_T$ for b) midcentral events at 1.2 < $y$ < 2.2. Type A represents uncertainties that are uncorrelated from point to point, Type B represents uncertainties that are correlated from point to point, and Type C represents uncertainties in the overall normalization.

$J/\psi$ —> $\mu^+\mu^-$ $R_{dAu}$, as a function of $p_T$ for c) midperipheral events at 1.2 < $y$ < 2.2. Type A represents uncertainties that are uncorrelated from point to point, Type B represents uncertainties that are correlated from point to point, and Type C represents uncertainties in the overall normalization.

$J/\psi$ —> $\mu^+\mu^-$ $R_{dAu}$, as a function of $p_T$ for d) peripheral events at 1.2 < $y$ < 2.2. Type A represents uncertainties that are uncorrelated from point to point, Type B represents uncertainties that are correlated from point to point, and Type C represents uncertainties in the overall normalization.

Heavy flavor electron RdA 0-20% $d$+Au collisions. The nuclear modification factor, $R_{dA}$, for electrons from open heavy flavor decays, for the (a) most central and (b) most peripheral centrality bins.

Heavy flavor electron $R_{dA}$ 20-40% $d$+Au collisions. The nuclear modification factor, $R_{dA}$, for electrons from open heavy flavor decays, for the (a) most central and (b) most peripheral centrality bins.

Heavy flavor electron $R_{dA}$ 40-60% $d$+Au collisions. The nuclear modification factor, $R_{dA}$, for electrons from open heavy flavor decays, for the (a) most central and (b) most peripheral centrality bins.

Heavy flavor electron $R_{dA}$ 60-88% $d$+Au collisions. The nuclear modification factor, $R_{dA}$, for electrons from open heavy flavor decays, for the (a) most central and (b) most peripheral centrality bins.