High-energy proton- and deuteron-nucleus collisions provide an excellent tool for studying a wide array of physics effects, including modifications of parton distribution functions in nuclei, gluon saturation, and color neutralization and hadronization in a nuclear environment, among others. All of these effects are expected to have a significant dependence on the size of the nuclear target and the impact parameter of the collision, also known as the collision centrality. In this article, we detail a method for determining centrality classes in p(d)+A collisions via cuts on the multiplicity at backward rapidity (i.e., the nucleus-going direction) and for determining systematic uncertainties in this procedure. For d+Au collisions at sqrt(s_NN) = 200 GeV we find that the connection to geometry is confirmed by measuring the fraction of events in which a neutron from the deuteron does not interact with the nucleus. As an application, we consider the nuclear modification factors R_{p(d)+A}, for which there is a potential bias in the measured centrality dependent yields due to auto-correlations between the process of interest and the backward rapidity multiplicity. We determine the bias correction factor within this framework. This method is further tested using the HIJING Monte Carlo generator. We find that for d+Au collisions at sqrt(s_NN)=200 GeV, these bias corrections are small and vary by less than 5% (10%) up to p_T = 10 (20) GeV. In contrast, for p+Pb collisions at sqrt(s_NN) = 5.02 TeV we find these bias factors are an order of magnitude larger and strongly p_T dependent, likely due to the larger effect of multi-parton interactions.

We present measurements of $e^+e^-$ production at midrapidity in Au$+$Au collisions at $\sqrt{s_{_{NN}}}$ = 200 GeV. The invariant yield is studied within the PHENIX detector acceptance over a wide range of mass ($m_{ee} <$ 5 GeV/$c^2$) and pair transverse momentum ($p_T$ $<$ 5 GeV/$c$), for minimum bias and for five centrality classes. The \ee yield is compared to the expectations from known sources. In the low-mass region ($m_{ee}=0.30$--0.76 GeV/$c^2$) there is an enhancement that increases with centrality and is distributed over the entire pair \pt range measured. It is significantly smaller than previously reported by the PHENIX experiment and amounts to $2.3\pm0.4({\rm stat})\pm0.4({\rm syst})\pm0.2^{\rm model}$ or to $1.7\pm0.3({\rm stat})\pm0.3({\rm syst})\pm0.2^{\rm model}$ for minimum bias collisions when the open-heavy-flavor contribution is calculated with {\sc pythia} or {\sc mc@nlo}, respectively. The inclusive mass and $p_T$ distributions as well as the centrality dependence are well reproduced by model calculations where the enhancement mainly originates from the melting of the $\rho$ meson resonance as the system approaches chiral symmetry restoration. In the intermediate-mass region ($m_{ee}$ = 1.2--2.8 GeV/$c^2$), the data hint at a significant contribution in addition to the yield from the semileptonic decays of heavy-flavor mesons.

Direct photons have been measured in sqrt(s_NN)=200 GeV d+Au collisions at midrapidity. A wide p_T range is covered by measurements of nearly-real virtual photons (1<p_T<6 GeV/c) and real photons (5<p_T<16 GeV/c). The invariant yield of the direct photons in d+Au collisions over the scaled p+p cross section is consistent with unity. Theoretical calculations assuming standard cold nuclear matter effects describe the data well for the entire p_T range. This indicates that the large enhancement of direct photons observed in Au+Au collisions for 1.0<p_T<2.5 GeV/c is due to a source other than the initial-state nuclear effects.

The PHENIX experiment has measured $\phi$ meson production in $d$$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV using the dimuon and dielectron decay channels. The $\phi$ meson is measured in the forward (backward) $d$-going (Au-going) direction, $1.2<y<2.2$ ($-2.2<y<-1.2$) in the transverse-momentum ($p_T$) range from 1--7 GeV/$c$, and at midrapidity $|y|<0.35$ in the $p_T$ range below 7 GeV/$c$. The $\phi$ meson invariant yields and nuclear-modification factors as a function of $p_T$, rapidity, and centrality are reported. An enhancement of $\phi$ meson production is observed in the Au-going direction, while suppression is seen in the $d$-going direction, and no modification is observed at midrapidity relative to the yield in $p$$+$$p$ collisions scaled by the number of binary collisions. Similar behavior was previously observed for inclusive charged hadrons and open heavy flavor indicating similar cold-nuclear-matter effects.

The differential cross section for the production of direct photons in p+p collisions at sqrt(s)=200 GeV at midrapidity was measured in the PHENIX detector at the Relativistic Heavy Ion Collider. Inclusive-direct photons were measured in the transverse-momentum range from 5.5--25 GeV/c, extending the range beyond previous measurements. Event structure was studied with an isolation criterion. Next-to-leading-order perturbative-quantum-chromodynamics calculations give a good description of the spectrum. When the cross section is expressed versus x_T, the PHENIX data are seen to be in agreement with measurements from other experiments at different center-of-mass energies.

The second Fourier component v_2 of the azimuthal anisotropy with respect to the reaction plane was measured for direct photons at midrapidity and transverse momentum (p_T) of 1--13 GeV/c in Au+Au collisions at sqr(s_NN)=200 GeV. Previous measurements of this quantity for hadrons with p_T < 6 GeV/c indicate that the medium behaves like a nearly perfect fluid, while for p_T > 6 GeV/c a reduced anisotropy is interpreted in terms of a path-length dependence for parton energy loss. In this measurement with the PHENIX detector at the Relativistic Heavy Ion Collider we find that for p_T > 4 GeV/c the anisotropy for direct photons is consistent with zero, as expected if the dominant source of direct photons is initial hard scattering. However, in the p_T < 4 GeV/c region dominated by thermal photons, we find a substantial direct photon v_2 comparable to that of hadrons, whereas model calculations for thermal photons in this kinematic region significantly underpredict the observed v_2.

Transverse momentum distributions and yields for $\pi^{\pm}$, $K^{\pm}$, $p$ and $\bar{p}$ in $p+p$ collisions at $\sqrt{s}$=200 and 62.4 GeV at midrapidity are measured by the PHENIX experiment at the Relativistic Heavy Ion Collider (RHIC). These data provide important baseline spectra for comparisons with identified particle spectra in heavy ion collisions at RHIC. We present the inverse slope parameter $T_{\rm inv}$, mean transverse momentum $<p_T>$ and yield per unit rapidity $dN/dy$ at each energy, and compare them to other measurements at different $\sqrt{s}$ in $p+p$ and $p+\bar{p}$ collisions. We also present the scaling properties such as $m_T$ scaling, $x_T$ scaling on the $p_T$ spectra between different energies. To discuss the mechanism of the particle production in $p+p$ collisions, the measured spectra are compared to next-to-leading-order or next-to-leading-logarithmic perturbative quantum chromodynamics calculations.

New measurements by the PHENIX experiment at RHIC for eta production at midrapidity as a function of transverse momentum (p_T) and collision centrality in sqrt(s_NN) = 200 GeV Au+Au and p+p collisions are presented. They indicate nuclear modification factors (R_AA) that are similar both in magnitude and trend to those found in earlier pi^0 measurements. Linear fits to R_AA in the 5--20 GeV/c p_T region show that the slope is consistent with zero within two standard deviations at all centralities although a slow rise cannot be excluded. Having different statistical and systematic uncertainties the pi^0 and eta measurements are complementary at high p_T/ thus, along with the extended p_T range of these data they can provide additional constraints for theoretical modeling and the extraction of transport properties.

We report on charmonium measurements [J/psi(1S), psi'(2S), and chi_c(1P)] in p+p collisions at sqrt(s)=200 GeV. We find that the fraction of J/psi coming from the feed-down decay of psi' and chi_c in the midrapidity region ($|\eta|<0.35$) is 9.6+/-2.4% and 32+/-9%, respectively. We also report new, higher statistics p_T and rapidity dependencies of the J/psi yield via dielectron decay in the same midrapidity range and at forward rapidity (1.2<|eta|<2.4) via dimuon decay. These results are compared with measurements from other experiments and discussed in the context of current charmonium production models.

Flow coefficients v_n for n = 2, 3, 4, characterizing the anisotropic collective flow in Au+Au collisions at sqrt(s_NN) = 200 GeV, are measured relative to event planes Ψ_n determined at large rapidity. We report v_n as a function of transverse momentum and collision centrality, and study the correlations among the event planes of different order n. The v_n are well described by hydrodynamic models which employ a Glauber Monte Carlo initial state geometry with fluctuations, providing additional constraining power on the interplay between initial conditions and the effects of viscosity as the system evolves. This new constraint improves precision of the extracted viscosity to entropy density ratio eta/s.

Heavy quarkonia are observed to be suppressed in relativistic heavy ion collisions relative to their production in p+p collisions scaled by the number of binary collisions. In order to determine if this suppression is related to color screening of these states in the produced medium, one needs to account for other nuclear modifications including those in cold nuclear matter. In this paper, we present new measurements from the PHENIX 2007 data set of J/psi yields at forward rapidity (1.2<|y|<2.2) in Au+Au collisions at sqrt(s_NN)=200 GeV. The data confirm the earlier finding that the suppression of J/psi at forward rapidity is stronger than at midrapidity, while also extending the measurement to finer bins in collision centrality and higher transverse momentum (pT). We compare the experimental data to the most recent theoretical calculations that incorporate a variety of physics mechanisms including gluon saturation, gluon shadowing, initial-state parton energy loss, cold nuclear matter breakup, color screening, and charm recombination. We find J/psi suppression beyond cold-nuclear-matter effects. However, the current level of disagreement between models and d+Au data precludes using these models to quantify the hot-nuclear-matter suppression.

The PHENIX collaboration presents first measurements of low-momentum ($0.4<p_T<3$ GeV/$c$) direct-photon yields from Au$+$Au collisions at $\sqrt{s_{_{NN}}}$=39 and 62.4 GeV. For both beam energies the direct-photon yields are substantially enhanced with respect to expectations from prompt processes, similar to the yields observed in Au$+$Au collisions at $\sqrt{s_{_{NN}}}$=200. Analyzing the photon yield as a function of the experimental observable $dN_{\rm ch}/d\eta$ reveals that the low-momentum ($>$1\,GeV/$c$) direct-photon yield $dN_{\gamma}^{\rm dir}/d\eta$ is a smooth function of $dN_{\rm ch}/d\eta$ and can be well described as proportional to $(dN_{\rm ch}/d\eta)^\alpha$ with $\alpha{\sim}$1.25. This new scaling behavior holds for a wide range of beam energies at the Relativistic Heavy Ion Collider and Large Hadron Collider, for centrality selected samples, as well as for different, $A$$+$$A$ collision systems. At a given beam energy the scaling also holds for high $p_T$ ($>5$\,GeV/$c$) but when results from different collision energies are compared, an additional $\sqrt{s_{_{NN}}}$-dependent multiplicative factor is needed to describe the integrated-direct-photon yield.

We have measured direct photons for $p_T<5~$GeV/$c$ in minimum bias and 0\%--40\% most central events at midrapidity for Cu$+$Cu collisions at $\sqrt{s_{_{NN}}}=200$ GeV. The $e^{+}e^{-}$ contribution from quasi-real direct virtual photons has been determined as an excess over the known hadronic contributions in the $e^{+}e^{-}$ mass distribution. A clear enhancement of photons over the binary scaled $p$$+$$p$ fit is observed for $p_T<4$ GeV/$c$ in Cu$+$Cu data. The $p_T$ spectra are consistent with the Au$+$Au data covering a similar number of participants. The inverse slopes of the exponential fits to the excess after subtraction of the $p$$+$$p$ baseline are 285$\pm$53(stat)$\pm$57(syst)~MeV/$c$ and 333$\pm$72(stat)$\pm$45(syst)~MeV/$c$ for minimum bias and 0\%--40\% most central events, respectively. The rapidity density, $dN/dy$, of photons demonstrates the same power law as a function of $dN_{\rm ch}/d\eta$ observed in Au$+$Au at the same collision energy.

Fast parton probes produced by hard scattering and embedded within collisions of large nuclei have shown that partons suffer large energy loss and that the produced medium may respond collectively to the lost energy. We present measurements of neutral pion trigger particles at transverse momenta p^t_T = 4-12 GeV/c and associated charged hadrons (p^a_T = 0.5-7 GeV/c) as a function of relative azimuthal angle Delta Phi at midrapidity in Au+Au and p+p collisions at sqrt(s_NN) = 200 GeV. These data lead to two major observations. First, the relative angular distribution of low momentum hadrons, whose shape modification has been interpreted as a medium response to parton energy loss, is found to be modified only for p^t_T &lt; 7 GeV/c. At higher p^t_T, the data are consistent with unmodified or very weakly modified shapes, even for the lowest measured p^a_T. This observation presents a quantitative challenge to medium response scenarios. Second, the associated yield of hadrons opposite to the trigger particle in Au+Au relative to that in p+p (I_AA) is found to be suppressed at large momentum (IAA ~ 0.35-0.5), but less than the single particle nuclear modification factor (R_AA ~0.2).

The PHENIX collaboration at the Relativistic Heavy Ion Collider (RHIC) reports measurements of azimuthal dihadron correlations near midrapidity in $d$$+$Au collisions at $\sqrt{s_{_{NN}}}$=200 GeV. These measurements complement recent analyses by experiments at the Large Hadron Collider (LHC) involving central $p$$+$Pb collisions at $\sqrt{s_{_{NN}}}$=5.02 TeV, which have indicated strong anisotropic long-range correlations in angular distributions of hadron pairs. The origin of these anisotropies is currently unknown. Various competing explanations include parton saturation and hydrodynamic flow. We observe qualitatively similar, but larger, anisotropies in $d$$+$Au collisions compared to those seen in $p$$+$Pb collisions at the LHC. The larger extracted $v_2$ values in $d$$+$Au collisions at RHIC are consistent with expectations from hydrodynamic calculations owing to the larger expected initial-state eccentricity compared with that from $p$$+$Pb collisions. When both are divided by an estimate of the initial-state eccentricity the scaled anisotropies follow a common trend with multiplicity that may extend to heavy ion data at RHIC and the LHC, where the anisotropies are widely thought to arise from hydrodynamic flow.

We report the observation at the Relativistic Heavy Ion Collider (RHIC) of suppression of back-to-back correlations in the direct photon+jet channel in Au+Au relative to p+p collisions. Two-particle correlations of direct photon triggers with associated hadrons are obtained by statistical subtraction of the decay photon-hadron background. The initial momentum of the away-side parton is tightly constrained, because the parton-photon pair exactly balance in momentum at leading order in perturbative quantum chromodynamics (pQCD), making such correlations a powerful probe of the in-medium parton energy loss. The away-side nuclear suppression factor, I_AA, in central Au+Au collisions, is 0.32 +/- 0.12(stat) +/- 0.09(syst) for hadrons of 3 < p_T < 5 in coincidence with photons of 5 < p_T < 15 GeV/c. The suppression is comparable to that observed for high-p_T single hadrons and dihadrons. The direct photon associated yields in p+p collisions scale approximately with the momentum balance, z_T = p_T^hadron/p_T^photon, as expected for a measure of the away-side parton fragmentation function. We compare to Au+Au collisions for which the momentum balance dependence of the nuclear modification should be sensitive to the path-length dependence of parton energy loss.

Neutral-pion, pi^0, spectra were measured at midrapidity (|y|<0.35) in Au+Au collisions at sqrt(s_NN) = 39 and 62.4 GeV and compared to earlier measurements at 200 GeV in the 1<p_T<10 GeV/c transverse-momentum (p_T) range. The high-p_T tail is well described by a power law in all cases and the powers decrease significantly with decreasing center-of-mass energy. The change of powers is very similar to that observed in the corresponding p+p-collision spectra. The nuclear-modification factors (R_AA) show significant suppression and a distinct energy dependence at moderate p_T in central collisions. At high p_T, R_AA is similar for 62.4 and 200 GeV at all centralities. Perturbative-quantum-chromodynamics calculations that describe R_AA well at 200 GeV, fail to describe the 39 GeV data, raising the possibility that the relative importance of initial-state effects and soft processes increases at lower energies. A conclusion that the region where hard processes are dominant is reached only at higher p_T, is also supported by the x_T dependence of the x_T-scaling power-law exponent.

We present measurements of electrons and positrons from the semileptonic decays of heavy-flavor hadrons at midrapidity ($|y|<$ 0.35) in Au$+$Au collisions at $\sqrt{s_{_{NN}}}=62.4$ GeV. The data were collected in 2010 by the PHENIX experiment that included the new hadron-blind detector. The invariant yield of electrons from heavy-flavor decays is measured as a function of transverse momentum in the range $1<p_T^e<5$ GeV/$c$. The invariant yield per binary collision is slightly enhanced above the $p$$+$$p$ reference in Au$+$Au 0%--20%, 20%--40% and 40%--60% centralities at a comparable level. This may be a result of the interplay between initial-state Cronin effects, final-state flow, and energy loss for heavy-quark production at this low beam energy. The $v_2$ of electrons from heavy-flavor decays is nonzero when averaged between $1.3<p_T^e<2.5$ GeV/$c$ from $0<{\rm centrality}<40$% collisions at $\sqrt{s_{_{NN}}}=62.4$ GeV. For 20%--40% centrality collisions, the $v_2$ at $\sqrt{s_{_{NN}}}=62.4$ GeV is smaller than that for heavy flavor decays at $\sqrt{s_{_{NN}}}=200$ GeV. The $v_2$ of the electrons from heavy-flavor decay at the lower beam energy is also smaller than $v_2$ for pions. Both results indicate that the heavy-quarks interact with the medium formed in these collisions, but they may not be at the same level of thermalization with the medium as observed at $\sqrt{s_{_{NN}}}=200$ GeV.

Differential measurements of the elliptic (v_2) and hexadecapole (v_4) Fourier flow coefficients are reported for charged hadrons as a function of transverse momentum (p_T) and collision centrality or the number of participant nucleons (N_part) for Au+Au collisions at sqrt(s_NN)=200 GeV. The v_{2,4} measurements at pseudorapidity |\eta|<=0.35 obtained with four separate reaction plane detectors positioned in the range 1.0<|\eta|<3.9 show good agreement, indicating the absence of significant \eta-dependent nonflow perturbations. Sizable values for v_4(p_T) are observed with a ratio v_4(p_T,N_part)/v_2^2(p_T,N_part)~0.8 for 50<N_part<200, which is compatible with the combined effects of a finite viscosity and initial eccentricity fluctuations. For N_part>200 this ratio increases up to 1.7 in the most central collisions.

We present a detailed measurement of charged two-pion correlation functions in 0%-30% centrality $\sqrt{s_{_{NN}}}=200$ GeV Au$+$Au collisions by the PHENIX experiment at the Relativistic Heavy Ion Collider. The data are well described by Bose-Einstein correlation functions stemming from L\'evy-stable source distributions. Using a fine transverse momentum binning, we extract the correlation strength parameter $\lambda$, the L\'evy index of stability $\alpha$ and the L\'evy length scale parameter $R$ as a function of average transverse mass of the pair $m_T$. We find that the positively and the negatively charged pion pairs yield consistent results, and their correlation functions are represented, within uncertainties, by the same L\'evy-stable source functions. The $\lambda(m_T)$ measurements indicate a decrease of the strength of the correlations at low $m_T$. The L\'evy length scale parameter $R(m_T)$ decreases with increasing $m_T$, following a hydrodynamically predicted type of scaling behavior. The values of the L\'evy index of stability $\alpha$ are found to be significantly lower than the Gaussian case of $\alpha=2$, but also significantly larger than the conjectured value that may characterize the critical point of a second-order quark-hadron phase transition.

The PHENIX experiment at the Relativistic Heavy Ion Collider has measured low mass vector meson, $\omega$, $\rho$, and $\phi$, production through the dimuon decay channel at forward rapidity ($1.2<|y|<2.2$) in $p$$+$$p$ collisions at $\sqrt{s}=200$ GeV. The differential cross sections for these mesons are measured as a function of both $p_T$ and rapidity. We also report the integrated differential cross sections over $1<p_T<7$ GeV/$c$ and $1.2<|y|<2.2$: $d\sigma/dy(\omega+\rho\rightarrow\mu\mu) = 80 \pm 6 \mbox{(stat)} \pm 12 \mbox{(syst)}$ nb and $d\sigma/dy(\phi\rightarrow\mu\mu) = 27 \pm 3 \mbox{(stat)} \pm 4 \mbox{(syst)}$ nb. These results are compared with midrapidity measurements and calculations.

The azimuthal anisotropy coefficients v_2 and v_4 of pi^0 and eta mesons are measured in Au+Au collisions at sqrt(s_NN)=200 GeV, as a function of transverse momentum p_T (1-14 GeV/c) and centrality. The extracted v_2 coefficients are found to be consistent between the two meson species over the measured p_T range. The ratio of v_4/v_2^2 for pi^0 mesons is found to be independent of p_T for 1-9 GeV/c, implying a lack of sensitivity of the ratio to the change of underlying physics with p_T. Furthermore, the ratio of v_4/v_2^2 is systematically larger in central collisions, which may reflect the combined effects of fluctuations in the initial collision geometry and finite viscosity in the evolving medium.

The measurement of direct photons from Au$+$Au collisions at $\sqrt{s_{_{NN}}}=39$ and 62.4 GeV in the transverse-momentum range $0.4<p_T<3$ Gev/$c$ is presented by the PHENIX collaboration at the Relativistic Heavy Ion Collider. A significant direct-photon yield is observed in both collision systems. A universal scaling is observed when the direct-photon $p_T$ spectra for different center-of-mass energies and for different centrality selections at $\sqrt{s_{_{NN}}}=62.4$ GeV is scaled with $(dN_{\rm ch}/d\eta)^{\alpha}$ for $\alpha=1.21{\pm}0.04$. This scaling also holds true for direct-photon spectra from Au$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV measured earlier by PHENIX, as well as the spectra from Pb$+$Pb at $\sqrt{s_{_{NN}}}=2760$ GeV published by ALICE. The scaling power $\alpha$ seems to be independent of $p_T$, center of mass energy, and collision centrality. The spectra from different collision energies have a similar shape up to $p_T$ of 2 GeV/$c$. The spectra have a local inverse slope $T_{\rm eff}$ increasing with $p_T$ of $0.174\pm0.018$ GeV/$c$ in the range $0.4<p_T<1.3$ GeV/$c$ and increasing to $0.289\pm0.024$ GeV/$c$ for $0.9<p_T<2.1$ GeV/$c$. The observed similarity of low-$p_T$ direct-photon production from $\sqrt{s_{_{NN}}}= 39$ to 2760 GeV suggests a common source of direct photons for the different collision energies and event centrality selections, and suggests a comparable space-time evolution of direct-photon emission.

The PHENIX experiment has measured electrons and positrons at midrapidity from the decays of hadrons containing charm and bottom quarks produced in d+Au and p+p collisions at sqrt(s_NN)=200 GeV at the Relativistic Heavy Ion Collider, in the transverse-momentum range 0.85 < pT < 8.5 GeV/c. In central d+Au collisions, the nuclear modification factor R_dA at 1.5 < pT < 5 GeV/c displays evidence of enhancement of these electrons, relative to those produced in p+p collisions, and shows that the mass-dependent Cronin enhancement observed at RHIC extends to the heavy-D-meson family. A comparison with the neutral-pion data suggests that the difference in cold-nuclear-matter effects on light- and heavy-flavor mesons could contribute to the observed differences between the pi0 and heavy-flavor-electron nuclear modification factor R_AA.

We present measurements of the J/psi invariant yields in sqrt(s_NN)=39 and 62.4 GeV Au+Au collisions at forward rapidity (1.2<|y|<2.2). Invariant yields are presented as a function of both collision centrality and transverse momentum. Nuclear modifications are obtained for central relative to peripheral Au+Au collisions (R_CP) and for various centrality selections in Au+Au relative to scaled p+p cross sections obtained from other measurements (R_AA). The observed suppression patterns at 39 and 62.4 GeV are quite similar to those previously measured at 200 GeV. This similar suppression presents a challenge to theoretical models that contain various competing mechanisms with different energy dependencies, some of which cause suppression and others enhancement.

We present measurements from the PHENIX experiment of large parity-violating single spin asymmetries of high transverse momentum electrons and positrons from $W^\pm/Z$ decays, produced in longitudinally polarized $p$$+$$p$ collisions at center of mass energies of $\sqrt{s}$=500 and 510~GeV. These asymmetries allow direct access to the anti-quark polarized parton distribution functions due to the parity-violating nature of the $W$-boson coupling to quarks and anti-quarks. The results presented are based on data collected in 2011, 2012, and 2013 with an integrated luminosity of 240 pb$^{-1}$, which exceeds previous PHENIX published results by a factor of more than 27. These high $Q^2$ data provide an important addition to our understanding of anti-quark parton helicity distribution functions.

We report the measurement of the transverse momentum dependence of inclusive J/psi polarization in p+p collisions at sqrt(s)=200 GeV performed by the PHENIX Experiment at RHIC. The polarization is studied in the helicity, Gottfried-Jackson, and Collins-Soper frames for p_T < 5 GeV/c and |y| < 0.35. The J/psi polarization in the helicity and Gottfried-Jackson frames is consistent with zero for all transverse momenta, with a slight (1.8 sigma) trend towards longitudinal polarization for transverse momenta above 2 GeV/c. No conclusion is allowed due to the limited acceptance in the Collins-Soper frame and the uncertainties of the current data. The results are compared to observations for other collision systems and center of mass energies and to different quarkonia production models.

The PHENIX experiment at RHIC has measured the centrality dependence of the direct photon yield from Au$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV down to $p_T=0.4$ GeV/$c$. Photons are detected via photon conversions to $e^+e^-$ pairs and an improved technique is applied that minimizes the systematic uncertainties that usually limit direct photon measurements, in particular at low $p_T$. We find an excess of direct photons above the $N_{\rm coll}$-scaled yield measured in $p$$+$$p$ collisions. This excess yield is well described by an exponential distribution with an inverse slope of about 240 MeV/$c$ in the $p_T$ range from 0.6--2.0 GeV/$c$. While the shape of the $p_T$ distribution is independent of centrality within the experimental uncertainties, the yield increases rapidly with increasing centrality, scaling approximately with $N_{\rm part}^\alpha$, where $\alpha=1.48{\pm}0.08({\rm stat}){\pm}0.04({\rm syst})$.

The PHENIX experiment at the Relativistic Heavy Ion Collider has measured 2nd and 3rd order Fourier coefficients of the azimuthal distributions of direct photons emitted at midrapidity in Au$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV for various collision centralities. Combining two different analysis techniques, results were obtained in the transverse momentum range of $0.4<p_{T}<4.0$ GeV/$c$. At low $p_T$ the second-order coefficients, $v_2$, are similar to the ones observed in hadrons. Third order coefficients, $v_3$, are nonzero and almost independent of centrality. These new results on $v_2$ and $v_3$, combined with previously published results on yields, are compared to model calculations that provide yields and asymmetries in the same framework. Those models are challenged to explain simultaneously the observed large yield and large azimuthal anisotropies.

We present a systematic study of charged pion and kaon interferometry in Au$+$Au collisions at $\sqrt{s_{_{NN}}}$=200 GeV. The kaon mean source radii are found to be larger than pion radii in the outward and longitudinal directions for the same transverse mass; this difference increases for more central collisions. The azimuthal-angle dependence of the radii was measured with respect to the second-order event plane and similar oscillations of the source radii were found for pions and kaons. Hydrodynamic models qualitatively describe the similar oscillations of the mean source radii for pions and kaons, but they do not fully describe the transverse-mass dependence of the oscillations.

We present measured J/psi production rates in d+Au collisions at sqrt(s_NN) = 200 GeV over a broad range of transverse momentum (p_T=0-14 GeV/c) and rapidity (-2.2<y<2.2). We construct the nuclear-modification factor R_dAu for these kinematics and as a function of collision centrality (related to impact parameter for the R_dAu collision). We find that the modification is largest for collisions with small impact parameters, and observe a suppression (R_dAu<1) for p_T<4 GeV/c at positive rapidities. At negative rapidity we observe a suppression for p_T<2 GeV/c then an enhancement (R_dAu>1) for p_T>2 GeV/c. The observed enhancement at negative rapidity has implications for the observed modification in heavy-ion collisions at high p_T.

We report $e^\pm-\mu^\mp$ pair yield from charm decay measured between midrapidity electrons ($|\eta|<0.35$ and $p_T>0.5$ GeV/$c$) and forward rapidity muons ($1.4<\eta<2.1$ and $p_T>1.0$ GeV/$c$) as a function of $\Delta\phi$ in both $p$$+$$p$ and in $d$+Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV. Comparing the $p$$+$$p$ results with several different models, we find the results are consistent with a total charm cross section $\sigma_{c\bar{c}} =$ 538 $\pm$ 46 (stat) $\pm$ 197 (data syst) $\pm$ 174 (model syst) $\mu$b. These generators also indicate that the back-to-back peak at $\Delta\phi = \pi$ is dominantly from the leading order contributions (gluon fusion), while higher order processes (flavor excitation and gluon splitting) contribute to the yield at all $\Delta\phi$. We observe a suppression in the pair yield per collision in $d$+Au. We find the pair yield suppression factor for $2.7<\Delta\phi<3.2$ rad is $J_{dA}$ = 0.433 $\pm$ 0.087 (stat) $\pm$ 0.135 (syst), indicating cold nuclear matter modification of $c\bar{c}$ pairs.

We report on the first measurement of double-spin asymmetry, A_LL, of electrons from the decays of hadrons containing heavy flavor in longitudinally polarized p+p collisions at sqrt(s)=200 GeV for p_T= 0.5 to 3.0 GeV/c. The asymmetry was measured at mid-rapidity (|eta|<0.35) with the PHENIX detector at the Relativistic Heavy Ion Collider. The measured asymmetries are consistent with zero within the statistical errors. We obtained a constraint for the polarized gluon distribution in the proton of |Delta g/g(log{_10}x= -1.6^+0.5_-0.4, {mu}=m_T^c)|^2 < 0.033 (1 sigma), based on a leading-order perturbative-quantum-chromodynamics model, using the measured asymmetry.

The PHENIX experiment has measured the production of neutral pions in Au+Au collisions at sqrt(s_NN)=200 GeV. The new data offer a fourfold increase in recorded luminosity, providing higher precision and a larger reach in transverse momentum, p_T, to 20 GeV/c. The production ratio of eta/pi^0 is 0.46+/-0.01(stat)+/-0.05(syst), constant with p_T and collision centrality. The observed ratio is consistent with earlier measurements, as well as with the p+p and d+Au values. The production of pi^0 is suppressed by a factor of 5, as in earlier findings. However, with the improved statistical precision a small but significant rise of the nuclear modification factor, R_AA, vs p_T, with a slope of 0.0106+/-^(0.0034)_(0.0029)[GeV/c]^-1, is discernible in central collisions. A phenomenological extraction of the average fractional parton energy loss shows a decrease with increasing p_T. To study the path length dependence of suppression, the pi^0 yield was measured at different angles with respect to the event plane; a strong azimuthal dependence of the pi^0 R_AA is observed. The data are compared to theoretical models of parton energy loss as a function of the path length, L, in the medium. Models based on pQCD are insufficient to describe the data, while a hybrid model utilizing pQCD for the hard interactions and AdS/CFT for the soft interactions is consistent with the data.

Correlations of charged hadrons of 1 < pT < 10 GeV/c with high pT direct photons and pi^ 0 mesons in the range 5 <pT < 15 GeV/c are used to study jet fragmentation in the photon+jet and di-jet channels, respectively. The magnitude of the partonic transverse momentum, kT, is obtained by comparing to a model incorporating a Gaussian kT smearing. The sensitivity of the associated charged hadron spectra to the underlying fragmentation function is tested and the data are compared to calculations using recent global fit results. The shape of the direct photon-associated hadron spectrum as well as its charge asymmetry are found to be consistent with a sample dominated by quark-gluon Compton scattering. No significant evidence of fragmentation photon correlated production is observed within experimental uncertainties.

The transverse momentum (p_T) spectra and ratios of identified charged hadrons (\pi^+/-, K^+/-, p, p^bar) produced in sqrt(s_NN)=200 GeV Au+Au and d+Au collisions are reported in five different centrality classes for each collision species. The measurements of pions and protons are reported up to p_T=6 GeV/c (5 GeV/c), and the measurements of kaons are reported up to p_T=4 GeV/c (3.5 GeV/c) in Au+Au (d+Au) collisions. In the intermediate p_T region, between 2--5 GeV/c, a significant enhancement of baryon to meson ratios compared to those measured in p+p collisions is observed. This enhancement is present in both Au+Au and d+Au collisions, and increases as the collisions become more central. We compare a class of peripheral Au+Au collisions with a class of central d+Au collisions which have a comparable number of participating nucleons and binary nucleon-nucleon collisions. The p_T dependent particle ratios for these classes display a remarkable similarity, which is then discussed.

We report a measurement of $e^+e^-$ pairs from semileptonic heavy-flavor decays in $d$$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV. Exploring the mass and transverse-momentum dependence of the yield, the bottom decay contribution can be isolated from charm, and quantified by comparison to {\sc pythia} and {\sc mc@nlo} simulations. The resulting $b\bar{b}$-production cross section is $\sigma^{d{\rm Au}}_{b\bar{b}}=1.37{\pm}0.28({\rm stat}){\pm}0.46({\rm syst})$~mb, which is equivalent to a nucleon-nucleon cross section of $\sigma^{NN}_{bb}=3.4\pm0.8({\rm stat}){\pm}1.1({\rm syst})\ \mu$b.

We present results for three charmonia states (psi^prime, chi_c and J/psi) in d+Au collisions at |y|<0.35 and sqrt(s_NN)=200 GeV. We find that the modification of the psi^prime yield relative to that of the J/psi scales approximately with charged-particle multiplicity at midrapidity across p+A, d+Au, and A+A results from the Super Proton Synchrotron and the Relativistic Heavy Ion Collider. In large impact-parameter collisions we observe a similar suppression for the psi^prime and J/psi, while in small impact-parameter collisions the more weakly bound psi^prime is more strongly suppressed. Owing to the short time spent traversing the Au nucleus, the larger psi^prime suppression in central events is not explained by an increase of the nuclear absorption due to meson formation time effects.

It has been postulated that partonic orbital angular momentum can lead to a significant double-helicity dependence in the net transverse momentum of Drell-Yan dileptons produced in longitudinally polarized p+p collisions. Analogous effects are also expected for dijet production. If confirmed by experiment, this hypothesis, which is based on semi-classical arguments, could lead to a new approach for studying the contributions of orbital angular momentum to the proton spin. We report the first measurement of the double-helicity dependence of the dijet transverse momentum in longitudinally polarized p+p collisions at sqrt(s) = 200 GeV from data taken by the PHENIX experiment in 2005 and 2006. The analysis deduces the transverse momentum of the dijet from the widths of the near- and far-side peaks in the azimuthal correlation of the dihadrons. When averaged over the transverse momentum of the triggered particle, the difference of the root-mean-square of the dijet transverse momentum between like- and unlike-helicity collisions is found to be -37 +/- 88(stat) +/- 14(syst) MeV/c.

The PHENIX experiment at the Relativistic Heavy Ion Collider has measured the invariant differential cross section for production of K^0_S , \omega, \eta prime, and \phi mesons in p + p collisions at = 200 GeV. Measurements \omega and \phi production in different decay channels give consistent results. New results for the \phi are in agreement with previously published data and extend the measured pT coverage. The spectral shapes of all hadron transverse momentum distributions measured by PHENIX are well described by a Tsallis distribution functional form with only two parameters, n and T, determining the high-pT and characterizing the low-pT regions of the spectra, respectively. The values of these parameters are very similar for all analyzed meson spectra, but with a lower parameter T extracted for protons. The integrated invariant cross sections calculated from the fitted distributions are found to be consistent with existing measurements and with statistical model predictions.

Neutral pion transverse momentum (pT) spectra at mid-rapidity (|y| < 0.35) were measured in Cu+Cu collisions at \sqrt s_NN = 22.4, 62.4, and 200 GeV. Relative to pi -zero yields in p+p collisions scaled by the number of inelastic nucleon-nucleon collisions (Ncoll) at the respective energies, the pi-zero yields for pT \ge 2 GeV/c in central Cu+Cu collisions at 62.4 and 200 GeV are suppressed, whereas an enhancement is observed at 22.4 GeV. A comparison with a jet quenching model suggests that final state parton energy loss dominates in central Cu+Cu collisions at 62.4 GeV and 200 GeV, while the enhancement at 22.4 GeV is consistent with nuclear modifications in the initial state alone.

Back-to-back hadron pair yields in d+Au and p+p collisions at sqrt(s_NN)=200 GeV were measured with the PHENIX detector at the Relativistic Heavy Ion Collider. Rapidity separated hadron pairs were detected with the trigger hadron at pseudorapidity |eta|<0.35 and the associated hadron at forward rapidity (deuteron direction, 3.0<eta<3.8). Pairs were also detected with both hadrons measured at forward rapidity; in this case the yield of back-to-back hadron pairs in d+Au collisions with small impact parameters is observed to be suppressed by a factor of 10 relative to p+p collisions. The kinematics of these pairs is expected to probe partons in the Au nucleus with low fraction x of the nucleon momenta, where the gluon densities rise sharply. The observed suppression as a function of nuclear thickness, p_T, and eta points to cold nuclear matter effects arising at high parton densities.

We present the first measurement of elliptic ($v_2$) and triangular ($v_3$) flow in high-multiplicity $^{3}$He$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV. Two-particle correlations, where the particles have a large separation in pseudorapidity, are compared in $^{3}$He$+$Au and in $p$$+$$p$ collisions and indicate that collective effects dominate the second and third Fourier components for the correlations observed in the $^{3}$He$+$Au system. The collective behavior is quantified in terms of elliptic $v_2$ and triangular $v_3$ anisotropy coefficients measured with respect to their corresponding event planes. The $v_2$ values are comparable to those previously measured in $d$$+$Au collisions at the same nucleon-nucleon center-of-mass energy. Comparison with various theoretical predictions are made, including to models where the hot spots created by the impact of the three $^{3}$He nucleons on the Au nucleus expand hydrodynamically to generate the triangular flow. The agreement of these models with data may indicate the formation of low-viscosity quark-gluon plasma even in these small collision systems.

The PHENIX experiment at the Relativistic Heavy Ion Collider (RHIC) has measured $\phi$ meson production and its nuclear modification in asymmetric Cu$+$Au heavy-ion collisions at $\sqrt{s_{NN}}=200$ GeV at both forward Cu-going direction ($1.2<y<2.2$) and backward Au-going direction ($-2.2<y<-1.2$), rapidities. The measurements are performed via the dimuon decay channel and reported as a function of the number of participating nucleons, rapidity, and transverse momentum. In the most central events, 0\%--20\% centrality, the $\phi$ meson yield integrated over $1<p_T<5$ GeV/$c$ prefers a smaller value, which means a larger nuclear modification, in the Cu-going direction compared to the Au-going direction. Additionally, the nuclear-modification factor in Cu$+$Au collisions averaged over all centrality is measured to be similar to the previous PHENIX result in $d$$+$Au collisions for these rapidities.

The jet fragmentation function is measured with direct photon-hadron correlations in p+p and Au+Au collisions at sqrt(s_NN)=200 GeV. The p_T of the photon is an excellent approximation to the initial p_T of the jet and the ratio z_T=p_T^h/p_T^\gamma is used as a proxy for the jet fragmentation function. A statistical subtraction is used to extract the direct photon-hadron yields in Au+Au collisions while a photon isolation cut is applied in p+p. I_ AA, the ratio of jet fragment yield in Au+Au to that in p+p, indicates modification of the jet fragmentation function. Suppression, most likely due to energy loss in the medium, is seen at high z_T. The fragment yield at low z_T is enhanced at large angles. Such a trend is expected from redistribution of the lost energy into increased production of low-momentum particles.

We report the first measurement of transverse single-spin asymmetries in $J/\psi$ production from transversely polarized $p+p$ collisions at $\sqrt{s} = 200$ GeV with data taken by the PHENIX experiment in 2006 and 2008. The measurement was performed over the rapidity ranges $1.2 &lt; |y| &lt; 2.2$ and $ |y| &lt; 0.35$ for transverse momenta up to 6 GeV/$c$. $J/\psi$ production at RHIC is dominated by processes involving initial-state gluons, and transverse single-spin asymmetries of the $J/\psi$ can provide access to gluon dynamics within the nucleon. Such asymmetries may also shed light on the long-standing question in QCD of the $J/\psi$ production mechanism. Asymmetries were obtained as a function of $J/\psi$ transverse momentum and Feynman-$x$, with a value of $-0.086 \pm 0.026^{\rm stat} \pm 0.003^{\rm syst}$ in the forward region. This result suggests possible nonzero trigluon correlation functions in transversely polarized protons and, if well defined in this reaction, a nonzero gluon Sivers distribution function.

The PHENIX Collaboration at the Relativistic Heavy Ion Collider has measured open heavy-flavor production in minimum bias Au$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV via the yields of electrons from semileptonic decays of charm and bottom hadrons. Previous heavy-flavor electron measurements indicated substantial modification in the momentum distribution of the parent heavy quarks due to the quark-gluon plasma created in these collisions. For the first time, using the PHENIX silicon vertex detector to measure precision displaced tracking, the relative contributions from charm and bottom hadrons to these electrons as a function of transverse momentum are measured in Au$+$Au collisions. We compare the fraction of electrons from bottom hadrons to previously published results extracted from electron-hadron correlations in $p$$+$$p$ collisions at $\sqrt{s_{_{NN}}}=200$ GeV and find the fractions to be similar within the large uncertainties on both measurements for $p_T>4$ GeV/$c$. We use the bottom electron fractions in Au$+$Au and $p$$+$$p$ along with the previously measured heavy flavor electron $R_{AA}$ to calculate the $R_{AA}$ for electrons from charm and bottom hadron decays separately. We find that electrons from bottom hadron decays are less suppressed than those from charm for the region $3<p_T<4$ GeV/$c$.

The PHENIX experiment at the Relativistic Heavy Ion Collider (RHIC) has measured omega meson production via leptonic and hadronic decay channels in p+p, d+Au, Cu+Cu, and Au+Au collisions at sqrt(s_NN) = 200 GeV. The invariant transverse momentum spectra measured in different decay modes give consistent results. Measurements in the hadronic decay channel in Cu+Cu and Au+Au collisions show that omega production has a suppression pattern at high transverse momentum, similar to that of pi^0 and eta in central collisions, but no suppression is observed in peripheral collisions. The nuclear modification factors, R_AA, are consistent in Cu+Cu and Au+Au collisions at similar numbers of participant nucleons.

Measurements of bottomonium production in heavy ion and $p$$+$$p$ collisions at the Relativistic Heavy Ion Collider (RHIC) are presented. The inclusive yield of the three $\Upsilon$ states, $\Upsilon(1S+2S+3S)$, was measured in the PHENIX experiment via electron-positron decay pairs at midrapidity for Au$+$Au and $p$$+$$p$ collisions at $\sqrt{s_{_{NN}}}=200$ GeV. The $\Upsilon(1S+2S+3S)\rightarrow e^+e^-$ differential cross section at midrapidity was found to be $B_{\rm ee} d\sigma/dy =$ 108 $\pm$ 38 (stat) $\pm$ 15(syst) $\pm$ 11 (luminosity) pb in $p$$+$$p$ collisions. The nuclear modification factor in the 30\% most central Au$+$Au collisions indicates a suppression of the total $\Upsilon$ state yield relative to the extrapolation from $p$$+$$p$ collision data. The suppression is consistent with measurements made by STAR at RHIC and at higher energies by the CMS experiment at the Large Hadron Collider.

The PHENIX experiment presents results from the RHIC 2006 run with polarized proton collisions at sqrt(s) = 62.4 GeV for inclusive pi^0 production at mid-rapidity. Unpolarized cross section results are measured for transverse momenta p_T = 0.5 to 7 GeV/c. Next-to-leading order perturbative quantum chromodynamics calculations are compared with the data, and while the calculations are consistent with the measurements, next-to-leading logarithmic corrections improve the agreement. Double helicity asymmetries A_LL are presented for p_T = 1 to 4 GeV/c and probe the higher range of Bjorken_x of the gluon (x_g) with better statistical precision than our previous measurements at sqrt(s)=200 GeV. These measurements are sensitive to the gluon polarization in the proton for 0.06 < x_g < 0.4.