High-energy proton- and deuteron-nucleus collisions provide an excellent tool for studying a wide array of physics effects, including modifications of parton distribution functions in nuclei, gluon saturation, and color neutralization and hadronization in a nuclear environment, among others. All of these effects are expected to have a significant dependence on the size of the nuclear target and the impact parameter of the collision, also known as the collision centrality. In this article, we detail a method for determining centrality classes in p(d)+A collisions via cuts on the multiplicity at backward rapidity (i.e., the nucleus-going direction) and for determining systematic uncertainties in this procedure. For d+Au collisions at sqrt(s_NN) = 200 GeV we find that the connection to geometry is confirmed by measuring the fraction of events in which a neutron from the deuteron does not interact with the nucleus. As an application, we consider the nuclear modification factors R_{p(d)+A}, for which there is a potential bias in the measured centrality dependent yields due to auto-correlations between the process of interest and the backward rapidity multiplicity. We determine the bias correction factor within this framework. This method is further tested using the HIJING Monte Carlo generator. We find that for d+Au collisions at sqrt(s_NN)=200 GeV, these bias corrections are small and vary by less than 5% (10%) up to p_T = 10 (20) GeV. In contrast, for p+Pb collisions at sqrt(s_NN) = 5.02 TeV we find these bias factors are an order of magnitude larger and strongly p_T dependent, likely due to the larger effect of multi-parton interactions.

Direct photons have been measured in sqrt(s_NN)=200 GeV d+Au collisions at midrapidity. A wide p_T range is covered by measurements of nearly-real virtual photons (1<p_T<6 GeV/c) and real photons (5<p_T<16 GeV/c). The invariant yield of the direct photons in d+Au collisions over the scaled p+p cross section is consistent with unity. Theoretical calculations assuming standard cold nuclear matter effects describe the data well for the entire p_T range. This indicates that the large enhancement of direct photons observed in Au+Au collisions for 1.0<p_T<2.5 GeV/c is due to a source other than the initial-state nuclear effects.

The PHENIX experiment has measured $\phi$ meson production in $d$$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV using the dimuon and dielectron decay channels. The $\phi$ meson is measured in the forward (backward) $d$-going (Au-going) direction, $1.2<y<2.2$ ($-2.2<y<-1.2$) in the transverse-momentum ($p_T$) range from 1--7 GeV/$c$, and at midrapidity $|y|<0.35$ in the $p_T$ range below 7 GeV/$c$. The $\phi$ meson invariant yields and nuclear-modification factors as a function of $p_T$, rapidity, and centrality are reported. An enhancement of $\phi$ meson production is observed in the Au-going direction, while suppression is seen in the $d$-going direction, and no modification is observed at midrapidity relative to the yield in $p$$+$$p$ collisions scaled by the number of binary collisions. Similar behavior was previously observed for inclusive charged hadrons and open heavy flavor indicating similar cold-nuclear-matter effects.

The second Fourier component v_2 of the azimuthal anisotropy with respect to the reaction plane was measured for direct photons at midrapidity and transverse momentum (p_T) of 1--13 GeV/c in Au+Au collisions at sqr(s_NN)=200 GeV. Previous measurements of this quantity for hadrons with p_T < 6 GeV/c indicate that the medium behaves like a nearly perfect fluid, while for p_T > 6 GeV/c a reduced anisotropy is interpreted in terms of a path-length dependence for parton energy loss. In this measurement with the PHENIX detector at the Relativistic Heavy Ion Collider we find that for p_T > 4 GeV/c the anisotropy for direct photons is consistent with zero, as expected if the dominant source of direct photons is initial hard scattering. However, in the p_T < 4 GeV/c region dominated by thermal photons, we find a substantial direct photon v_2 comparable to that of hadrons, whereas model calculations for thermal photons in this kinematic region significantly underpredict the observed v_2.

New measurements by the PHENIX experiment at RHIC for eta production at midrapidity as a function of transverse momentum (p_T) and collision centrality in sqrt(s_NN) = 200 GeV Au+Au and p+p collisions are presented. They indicate nuclear modification factors (R_AA) that are similar both in magnitude and trend to those found in earlier pi^0 measurements. Linear fits to R_AA in the 5--20 GeV/c p_T region show that the slope is consistent with zero within two standard deviations at all centralities although a slow rise cannot be excluded. Having different statistical and systematic uncertainties the pi^0 and eta measurements are complementary at high p_T/ thus, along with the extended p_T range of these data they can provide additional constraints for theoretical modeling and the extraction of transport properties.

We report on charmonium measurements [J/psi(1S), psi'(2S), and chi_c(1P)] in p+p collisions at sqrt(s)=200 GeV. We find that the fraction of J/psi coming from the feed-down decay of psi' and chi_c in the midrapidity region ($|\eta|<0.35$) is 9.6+/-2.4% and 32+/-9%, respectively. We also report new, higher statistics p_T and rapidity dependencies of the J/psi yield via dielectron decay in the same midrapidity range and at forward rapidity (1.2<|eta|<2.4) via dimuon decay. These results are compared with measurements from other experiments and discussed in the context of current charmonium production models.

Flow coefficients v_n for n = 2, 3, 4, characterizing the anisotropic collective flow in Au+Au collisions at sqrt(s_NN) = 200 GeV, are measured relative to event planes Ψ_n determined at large rapidity. We report v_n as a function of transverse momentum and collision centrality, and study the correlations among the event planes of different order n. The v_n are well described by hydrodynamic models which employ a Glauber Monte Carlo initial state geometry with fluctuations, providing additional constraining power on the interplay between initial conditions and the effects of viscosity as the system evolves. This new constraint improves precision of the extracted viscosity to entropy density ratio eta/s.

Heavy quarkonia are observed to be suppressed in relativistic heavy ion collisions relative to their production in p+p collisions scaled by the number of binary collisions. In order to determine if this suppression is related to color screening of these states in the produced medium, one needs to account for other nuclear modifications including those in cold nuclear matter. In this paper, we present new measurements from the PHENIX 2007 data set of J/psi yields at forward rapidity (1.2<|y|<2.2) in Au+Au collisions at sqrt(s_NN)=200 GeV. The data confirm the earlier finding that the suppression of J/psi at forward rapidity is stronger than at midrapidity, while also extending the measurement to finer bins in collision centrality and higher transverse momentum (pT). We compare the experimental data to the most recent theoretical calculations that incorporate a variety of physics mechanisms including gluon saturation, gluon shadowing, initial-state parton energy loss, cold nuclear matter breakup, color screening, and charm recombination. We find J/psi suppression beyond cold-nuclear-matter effects. However, the current level of disagreement between models and d+Au data precludes using these models to quantify the hot-nuclear-matter suppression.

The PHENIX collaboration presents first measurements of low-momentum ($0.4<p_T<3$ GeV/$c$) direct-photon yields from Au$+$Au collisions at $\sqrt{s_{_{NN}}}$=39 and 62.4 GeV. For both beam energies the direct-photon yields are substantially enhanced with respect to expectations from prompt processes, similar to the yields observed in Au$+$Au collisions at $\sqrt{s_{_{NN}}}$=200. Analyzing the photon yield as a function of the experimental observable $dN_{\rm ch}/d\eta$ reveals that the low-momentum ($>$1\,GeV/$c$) direct-photon yield $dN_{\gamma}^{\rm dir}/d\eta$ is a smooth function of $dN_{\rm ch}/d\eta$ and can be well described as proportional to $(dN_{\rm ch}/d\eta)^\alpha$ with $\alpha{\sim}$1.25. This new scaling behavior holds for a wide range of beam energies at the Relativistic Heavy Ion Collider and Large Hadron Collider, for centrality selected samples, as well as for different, $A$$+$$A$ collision systems. At a given beam energy the scaling also holds for high $p_T$ ($>5$\,GeV/$c$) but when results from different collision energies are compared, an additional $\sqrt{s_{_{NN}}}$-dependent multiplicative factor is needed to describe the integrated-direct-photon yield.

We have measured direct photons for $p_T<5~$GeV/$c$ in minimum bias and 0\%--40\% most central events at midrapidity for Cu$+$Cu collisions at $\sqrt{s_{_{NN}}}=200$ GeV. The $e^{+}e^{-}$ contribution from quasi-real direct virtual photons has been determined as an excess over the known hadronic contributions in the $e^{+}e^{-}$ mass distribution. A clear enhancement of photons over the binary scaled $p$$+$$p$ fit is observed for $p_T<4$ GeV/$c$ in Cu$+$Cu data. The $p_T$ spectra are consistent with the Au$+$Au data covering a similar number of participants. The inverse slopes of the exponential fits to the excess after subtraction of the $p$$+$$p$ baseline are 285$\pm$53(stat)$\pm$57(syst)~MeV/$c$ and 333$\pm$72(stat)$\pm$45(syst)~MeV/$c$ for minimum bias and 0\%--40\% most central events, respectively. The rapidity density, $dN/dy$, of photons demonstrates the same power law as a function of $dN_{\rm ch}/d\eta$ observed in Au$+$Au at the same collision energy.