Asymmetric nuclear collisions of $p$$+$Al, $p$$+$Au, $d$$+$Au, and $^{3}$He$+$Au at $\sqrt{s_{_{NN}}}=200$ GeV provide an excellent laboratory for understanding particle production, as well as exploring interactions among these particles after their initial creation in the collision. We present measurements of charged hadron production $dN_{\rm ch}/d\eta$ in all such collision systems over a broad pseudorapidity range and as a function of collision multiplicity. A simple wounded quark model is remarkably successful at describing the full data set. We also measure the elliptic flow $v_{2}$ over a similarly broad pseudorapidity range. These measurements provide key constraints on models of particle emission and their translation into flow.

We present measurements of two-particle angular correlations between high-transverse-momentum ($2<p_T<11$ GeV/$c$) $\pi^0$ observed at midrapidity ($|\eta|<0.35$) and particles produced either at forward ($3.1<\eta<3.9$) or backward ($-3.7<\eta<-3.1$) rapidity in $d$$+$Au and $p$$+$$p$ collisions at $\sqrt{s_{_{NN}}}=200$ GeV. The azimuthal angle correlations for particle pairs with this large rapidity gap in the Au-going direction exhibit a ridge-like structure that persists up to $p_T{\approx}6$ GeV/$c$ and which strongly depends on collision centrality, which is a similar characteristic to the hydrodynamical particle flow in A+A collisions. The ridge-like structure is absent in the $d$-going direction as well as in $p$$+$$p$ collisions, in the transverse-momentum range studied. The results indicate that the ridge-like structure is shifted in the Au-going direction toward more central collisions, similar to the charged-particle pseudorapidity distributions.

We present azimuthal angular correlations between charged hadrons and energy deposited in calorimeter towers in central $d$$+$Au and minimum bias $p$$+$$p$ collisions at $\sqrt{s_{_{NN}}}=200$ GeV. The charged hadron is measured at midrapidity $|\eta|<0.35$, and the energy is measured at large rapidity ($-3.7<\eta<-3.1$, Au-going direction). An enhanced near-side angular correlation across $|\Delta\eta| >$ 2.75 is observed in $d$$+$Au collisions. Using the event plane method applied to the Au-going energy distribution, we extract the anisotropy strength $v_2$ for inclusive charged hadrons at midrapidity up to $p_T=4.5$ GeV/$c$. We also present the measurement of $v_2$ for identified $\pi^{\pm}$ and (anti)protons in central $d$$+$Au collisions, and observe a mass-ordering pattern similar to that seen in heavy ion collisions. These results are compared with viscous hydrodynamic calculations and measurements from $p$$+$Pb at $\sqrt{s_{_{NN}}}=5.02$ TeV. The magnitude of the mass-ordering in $d$$+$Au is found to be smaller than that in $p$$+$Pb collisions, which may indicate smaller radial flow in lower energy $d$$+$Au collisions.

Azimuthal angle \Delta\phi correlations are presented for charged hadrons from dijets for 0.4 < p_T < 10 GeV/c in Au+Au collisions at sqrt(s_NN) = 200 GeV. With increasing p_T, the away-side distribution evolves from a broad to a concave shape, then to a convex shape. Comparisons to p+p data suggest that the away-side can be divided into a partially suppressed 'head' region centered at Delta\phi ~ \pi, and an enhanced 'shoulder' region centered at Delta\phi ~ \pi +/- 1.1. The p_T spectrum for the 'head' region softens toward central collisions, consistent with the onset of jet quenching. The spectral slope for the 'shoulder' region is independent of centrality and trigger p_T, which offers constraints on energy transport mechanisms and suggests that the 'shoulder' region contains the medium response to energetic jets.

Transverse momentum (p^e_T) spectra of electrons from semileptonic weak decays of heavy flavor mesons in the range of 0.3 < p^e_T < 9.0 GeV/c have been measured at mid-rapidity (|eta| < 0.35) by the PHENIX experiment at the Relativistic Heavy Ion Collider in p+p and Au+Au collisions at sqrt(s_NN)=200 GeV. The nuclear modification factor R_AA with respect to p+p collisions indicates substantial energy loss of heavy quarks in the produced medium. In addition, the azimuthal anisotropy parameter v_2 has been measured for 0.3 < p^e_T < 5.0 GeV/c in Au+Au collisions. Comparisons of R_AA and v_2 are made to various model calculations.

The three Upsilon states, Upsilon(1S+2S+3S), are measured in d+Au and p+p collisions at sqrt(s_NN)=200 GeV and rapidities 1.2<|y|<2.2 by the PHENIX experiment at the Relativistic Heavy-Ion Collider. Cross sections for the inclusive Upsilon(1S+2S+3S) production are obtained. The inclusive yields per binary collision for d+Au collisions relative to those in p+p collisions (R_dAu) are found to be 0.62 +/- 0.26 (stat) +/- 0.13 (syst) in the gold-going direction and 0.91 +/- 0.33 (stat) +/- 0.16 (syst) in the deuteron-going direction. The measured results are compared to a nuclear-shadowing model, EPS09 [JHEP 04, 065 (2009)], combined with a final-state breakup cross section, sigma_br, and compared to lower energy p+A results. We also compare the results to the PHENIX J/psi results [Phys. Rev. Lett. 107, 142301 (2011)]. The rapidity dependence of the observed Upsilon suppression is consistent with lower energy p+A measurements.

We report a measurement of $e^+e^-$ pairs from semileptonic heavy-flavor decays in $p$+$p$ collisions at $\sqrt{s_{NN}}=200$~GeV. The $e^+e^-$ pair yield from $b\bar{b}$ and $c\bar{c}$ is separated by exploiting a double differential fit done simultaneously in dielectron invariant mass and $p_T$. We used three different event generators, {\sc pythia}, {\sc mc@nlo}, and {\sc powheg}, to simulate the $e^+e^-$ spectra from $c\bar{c}$ and $b\bar{b}$ production. The data can be well described by all three generators within the detector acceptance. However, when using the generators to extrapolate to $4\pi$, significant differences are observed for the total cross section. These difference are less pronounced for $b\bar{b}$ than for $c\bar{c}$. The same model dependence was observed in already published $d$+$A$ data. The $p$+$p$ data are also directly compared with $d$+$A$ data in mass and $p_T$, and within the statistical accuracy no nuclear modification is seen.

The fraction of $J/\psi$ mesons which come from B-meson decay, $\textrm{F}_{B{\rightarrow}J/\psi}$, is measured for J/$\psi$ rapidity \mbox{$1.2<|y|<2.2$} and $p_T>0$ in $p$+$p$ and Cu+Au collisions at $\sqrt{s_{_{NN}}}$=200 GeV with the PHENIX detector. The extracted fraction is $\textrm{F}_{B{\rightarrow}J/\psi}$ = 0.025 $\pm$ 0.006(stat) $\pm$ 0.010(syst) for $p$+$p$ collisions. For Cu+Au collisions, $\textrm{F}_{B{\rightarrow}J/\psi}$ is 0.094 $\pm$ 0.028(stat) $\pm$ 0.037(syst) in the Au-going direction ($-2.2<y<-1.2$) and 0.089 $\pm$ 0.026(stat) $\pm$ 0.040(syst) in the Cu-going direction ($1.2<y<2.2$). The nuclear modification factor, $R_{\rm CuAu}$, of B mesons in Cu+Au collisions is consistent with binary scaling of measured yields in $p$+$p$ at both forward and backward rapidity.

The production of low mass e+e- pairs for m_{e+e-} < 300 MeV/c^2 and 1 < p_T <5 GeV/c is measured in p+p and Au+Au collisions at sqrt(s_NN)=200 GeV. Enhanced yield above hadronic sources is observed. Treating the excess as internal conversions, the invariant yield of direct photons is deduced. In central Au+Au collisions, the excess of direct photon yield over p+p is exponential in transverse momentum, with inverse slope T = 221 +/- 19 (stat) +/- 19 (syst) MeV. Hydrodynamical models with initial temperatures ranging from 300--600 MeV at times of ~ 0.6 - 0.15 fm/c after the collision are in qualitative agreement with the data. Lattice QCD predicts a phase transition to quark gluon plasma at ~ 170 MeV.

The PHENIX experiment at the Relativistic Heavy Ion Collider (RHIC) has measured omega meson production via leptonic and hadronic decay channels in p+p, d+Au, Cu+Cu, and Au+Au collisions at sqrt(s_NN) = 200 GeV. The invariant transverse momentum spectra measured in different decay modes give consistent results. Measurements in the hadronic decay channel in Cu+Cu and Au+Au collisions show that omega production has a suppression pattern at high transverse momentum, similar to that of pi^0 and eta in central collisions, but no suppression is observed in peripheral collisions. The nuclear modification factors, R_AA, are consistent in Cu+Cu and Au+Au collisions at similar numbers of participant nucleons.