Measurements of the differential production cross-sections of prompt and non-prompt $J/\psi$ and $\psi(2$S$)$ mesons with transverse momenta between 8 and 360 GeV and rapidity in the range $|y|<2$ are reported. Furthermore, measurements of the non-prompt fractions of $J/\psi$ and $\psi(2$S$)$, and the prompt and non-prompt $\psi(2$S$)$-to-$J/\psi$ production ratios, are presented. The analysis is performed using 140 fb$^{-1}$ of $\sqrt{s}=13$ TeV $pp$ collision data recorded by the ATLAS detector at the LHC during the years 2015-2018.

The dependence of the ratio between the B$_\mathrm{s}^0$ and B$^+$ hadron production fractions, $f_\mathrm{s} / f_\mathrm{u}$, on the transverse momentum ($p_\mathrm{T}$) and rapidity of the B mesons is studied using the decay channels B$_\mathrm{s}^0$$\to$ J$/\psi\,\phi$ and B$^+$$\to$ J$/\psi$ K$^+$. The analysis uses a data sample of proton-proton collisions at a center-of-mass energy of 13 TeV, collected by the CMS experiment in 2018 and corresponding to an integrated luminosity of 61.6 fb$^{-1}$. The $f_\mathrm{s} / f_\mathrm{u}$ ratio is observed to depend on the B $p_\mathrm{T}$ and to be consistent with becoming asymptotically constant at large $p_\mathrm{T}$. No rapidity dependence is observed. The ratio of the B$^0$ to B$^+$ hadron production fractions, $f_\mathrm{d} / f_\mathrm{u}$, measured using the B$^0$$\to$ J$/\psi$ K$^{*0}$ decay channel, is found to be consistent with unity and independent of $p_\mathrm{T}$ and rapidity, as expected from isospin invariance.

This paper presents measurements of charged-hadron spectra obtained in $pp$, $p$+Pb, and Pb+Pb collisions at $\sqrt{s}$ or $\sqrt{s_{_\text{NN}}}=5.02$ TeV, and in Xe+Xe collisions at $\sqrt{s_{_\text{NN}}}=5.44$ TeV. The data recorded by the ATLAS detector at the LHC have total integrated luminosities of 25 pb${}^{-1}$, 28 nb${}^{-1}$, 0.50 nb${}^{-1}$, and 3 $\mu$b${}^{-1}$, respectively. The nuclear modification factors $R_{p\text{Pb}}$ and $R_\text{AA}$ are obtained by comparing the spectra in heavy-ion and $pp$ collisions in a wide range of charged-particle transverse momenta and pseudorapidity. The nuclear modification factor $R_{p\text{Pb}}$ shows a moderate enhancement above unity with a maximum at $p_{\mathrm{T}} \approx 3$ GeV; the enhancement is stronger in the Pb-going direction. The nuclear modification factors in both Pb+Pb and Xe+Xe collisions feature a significant, centrality-dependent suppression. They show a similar distinct $p_{\mathrm{T}}$-dependence with a local maximum at $p_{\mathrm{T}} \approx 2$ GeV and a local minimum at $p_{\mathrm{T}} \approx 7$ GeV. This dependence is more distinguishable in more central collisions. No significant $|\eta|$-dependence is found. A comprehensive comparison with several theoretical predictions is also provided. They typically describe $R_\text{AA}$ better in central collisions and in the $p_{\mathrm{T}}$ range from about 10 to 100 GeV.

The ratios of the production cross sections between the excited $\Upsilon$(2S) and $\Upsilon$(3S) mesons and the $\Upsilon$(1S) ground state, detected via their decay into two muons, are studied as a function of the number of charged particles in the event. The data are from proton-proton collisions at $\sqrt{s} =$ 7 TeV, corresponding to an integrated luminosity of 4.8 fb$^{-1}$, collected with the CMS detector at the LHC. Evidence of a decrease in these ratios as a function of the particle multiplicity is observed, more pronounced at low transverse momentum $p_\mathrm{T}^{\mu\mu}$. For $\Upsilon$(nS) mesons with $p_\mathrm{T}^{\mu\mu}$ $\gt$ 7 GeV, where most of the data were collected, the correlation with multiplicity is studied as a function of the underlying event transverse sphericity and the number of particles in a cone around the $\Upsilon$(nS) direction. The ratios are found to be multiplicity independent for jet-like events. The mean $p_\mathrm{T}^{\mu\mu}$ values for the $\Upsilon$(nS) states as a function of particle multiplicity are also measured and found to grow more steeply as their mass increases.

The double differential cross sections of the Drell-Yan lepton pair ($\ell^+\ell^-$, dielectron or dimuon) production are measured as functions of the invariant mass $m_{\ell\ell}$, transverse momentum $p_\mathrm{T}(\ell\ell)$, and $\phi^*_\eta$. The $\phi^*_\eta$ observable, derived from angular measurements of the leptons and highly correlated with $p_\mathrm{T}(\ell\ell)$, is used to probe the low-$p_\mathrm{T}(\ell\ell)$ region in a complementary way. Dilepton masses up to 1 TeV are investigated. Additionally, a measurement is performed requiring at least one jet in the final state. To benefit from partial cancellation of the systematic uncertainty, the ratios of the differential cross sections for various $m_{\ell\ell}$ ranges to those in the Z mass peak interval are presented. The collected data correspond to an integrated luminosity of 36.3 fb$^{-1}$ of proton-proton collisions recorded with the CMS detector at the LHC at a centre-of-mass energy of 13 TeV. Measurements are compared with predictions based on perturbative quantum chromodynamics, including soft-gluon resummation.

The $B_\mathrm{c}^+$ meson is observed for the first time in heavy ion collisions. Data from the CMS detector are used to study the production of the $B_\mathrm{c}^+$ meson in lead-lead (PbPb) and proton-proton (pp) collisions at a center-of-mass energy per nucleon pair of $\sqrt{s_{\mathrm{NN}}} =$ 5.02 TeV, via the $B_\mathrm{c}^+ \to (J/\psi\to\mu^+\mu^-)\mu^+\nu_\mu$ decay. The $B_\mathrm{c}^+$ nuclear modification factor, derived from the PbPb-to-pp ratio of production cross sections, is measured in two bins of the trimuon transverse momentum and of the PbPb collision centrality. The B$_\mathrm{c}^+$ meson is shown to be less suppressed than quarkonia and most of the open heavy-flavor mesons, suggesting that effects of the hot and dense nuclear matter created in heavy ion collisions contribute to its production. This measurement sets forth a promising new probe of the interplay of suppression and enhancement mechanisms in the production of heavy-flavor mesons in the quark-gluon plasma.

Double-parton scattering is investigated using events with a Z boson and jets. The Z boson is reconstructed using only the dimuon channel. The measurements are performed with proton-proton collision data recorded by the CMS experiment at the LHC at $\sqrt{s} =$ 13 TeV, corresponding to an integrated luminosity of 35.9 fb$^{-1}$ collected in the year 2016. Differential cross sections of Z + $\geq$ 1 jet and Z + $\geq$ 2 jets are measured with transverse momentum of the jets above 20 GeV and pseudorapidity $|\eta|$$\lt$ 2.4. Several distributions with sensitivity to double-parton scattering effects are measured as functions of the angle and the transverse momentum imbalance between the Z boson and the jets. The measured distributions are compared with predictions from several event generators with different hadronization models and different parameter settings for multiparton interactions. The measured distributions show a dependence on the hadronization and multiparton interaction simulation parameters, and are important input for future improvements of the simulations.

Differential cross sections for the Drell-Yan process, including Z boson production, using the dimuon decay channel are measured in proton-lead (pPb) collisions at a nucleon-nucleon centre-of-mass energy of 8.16 TeV. A data sample recorded with the CMS detector at the LHC is used, corresponding to an integrated luminosity of 173 nb$^{-1}$. The differential cross section as a function of the dimuon mass is measured in the range 15-600 GeV, for the first time in proton-nucleus collisions. It is also reported as a function of dimuon rapidity over the mass ranges 15-60 GeV and 60-120 GeV, and ratios for the p-going over the Pb-going beam directions are built. In both mass ranges, the differential cross sections as functions of the dimuon transverse momentum $p_\mathrm{T}$ and of a geometric variable $\phi^*$ are measured, where $\phi^*$ highly correlates with $p_\mathrm{T}$ but is determined with higher precision. In the Z mass region, the rapidity dependence of the data indicate a modification of the distribution of partons within a lead nucleus as compared to the proton case. The data are more precise than predictions based upon current models of parton distributions.

The dependence of inclusive jet production in proton-proton collisions with a center-of-mass energy of 13 TeV on the distance parameter $R$ of the anti-$k_\mathrm{T}$ algorithm is studied using data corresponding to integrated luminosities up to 35.9 fb$^{-1}$ collected by the CMS experiment in 2016. The ratios of the inclusive cross sections as functions of transverse momentum $p_\mathrm{T}$ and rapidity $y$, for $R$ in the range 0.1 to 1.2 to those using $R = $ 0.4 are presented in the region 84 $\lt$ $p_\mathrm{T}$ $\lt$ 1588 GeV and $|y|$ $\lt$ 2.0. The results are compared to calculations at leading and next-to-leading order in the strong coupling constant using different parton shower models. The variation of the ratio of cross sections with $R$ is well described by calculations including a parton shower model, but not by a leading-order quantum chromodynamics calculation including nonperturbative effects. The agreement between the data and the theoretical predictions for the ratios of cross sections is significantly improved when next-to-leading order calculations with nonperturbative effects are used.

Differential production cross sections of J/$\psi$ and $\psi$(2S) charmonium and $\Upsilon$(nS) (n = 1, 2, 3) bottomonium states are measured in proton-proton collisions at $\sqrt{s} =$ 13 TeV, with data collected by the CMS detector at the LHC, corresponding to an integrated luminosity of 2.3 fb$^{-1}$ for the J/$\psi$ and 2.7 fb$^{-1}$ for the other mesons. The five quarkonium states are reconstructed in the dimuon decay channel, for dimuon rapidity $|y| <$ 1.2. The double-differential cross sections for each state are measured as a function of $y$ and transverse momentum, and compared to theoretical expectations. In addition, ratios are presented of cross sections for prompt $\psi$(2S) to J/$\psi$, $\Upsilon$(2S) to $\Upsilon$(1S), and $\Upsilon$(3S) to $\Upsilon$(1S) production.