J/psi production has been measured in proton-proton collisions at sqrt(s)= 200 GeV over a wide rapidity and transverse momentum range by the PHENIX experiment at RHIC. Distributions of the rapidity and transverse momentum, along with measurements of the mean transverse momentum and total production cross section are presented and compared to available theoretical calculations. The total J/psi cross section is 3.99 +/- 0.61(stat) +/- 0.58(sys) +/- 0.40(abs) micro barns. The mean transverse momentum is 1.80 +/- 0.23(stat) +/- 0.16(sys) GeV/c.

The PHENIX experiement has measured the electron-positron pair mass spectrum from 0 to 8 GeV/c^2 in p+p collisions at sqrt(s)=200 GeV. The contributions from light meson decays to e^+e^- pairs have been determined based on measurements of hadron production cross sections by PHENIX. They account for nearly all e^+e^- pairs in the mass region below 1 GeV/c^2. The e^+e^- pair yield remaining after subtracting these contributions is dominated by semileptonic decays of charmed hadrons correlated through flavor conservation. Using the spectral shape predicted by PYTHIA, we estimate the charm production cross section to be 544 +/- 39(stat) +/- 142(syst) +/- 200(model) \mu b, which is consistent with QCD calculations and measurements of single leptons by PHENIX.

J/Psi production in p+p collisions at sqrt(s) = 200 GeV has been Measured in the PHENIX experiment at the Relativistic Heavy Ion Collider (RHIC) over a rapidity range of -2.2 < y < 2.2 and a transverse momentum range of 0 < pT < 9 GeV/c. The statistics available allow a detailed measurement of both the pT and rapidity distributions and are sufficient to constrain production models. The total cross section times branching ratio determined for J/Psi production is B_{ll} sigma_pp^J/psi = 178 +/- 3(stat) +/- 53(syst) +/- 18(norm) nb.

The PHENIX experiment has measured mid-rapidity transverse momentum spectra (0.4 < p_T < 4.0 GeV/c) of single electrons as a function of centrality in Au+Au collisions at sqrt(s_NN) = 200 GeV. Contributions to the raw spectra from photon conversions and Dalitz decays of light neutral mesons are measured by introducing a thin (1.7% X_0) converter into the PHENIX acceptance and are statistically removed. The subtracted ``non-photonic'' electron spectra are primarily due to the semi-leptonic decays of hadrons containing heavy quarks (charm and bottom). For all centralities, charm production is found to scale with the nuclear overlap function, T_AA. For minimum-bias collisions the charm cross section per binary collision is N_cc^bar/T_AA = 622 +/- 57 (stat.) +/- 160 (sys.) microbarns.

J/psi production in d+Au and p+p collisions at sqrt(s_NN) = 200 GeV has been measured by the PHENIX experiment at rapidities -2.2 < y < +2.4. The cross sections and nuclear dependence of J/\psi production versus rapidity, transverse momentum, and centrality are obtained and compared to lower energy p+A results and to theoretical models. The observed nuclear dependence in d+Au collisions is found to be modest, suggesting that the absorption in the final state is weak and the shadowing of the gluon distributions is small and consistent with Dokshitzer-Gribov-Lipatov-Altarelli-Parisi-based parameterizations that fit deep-inelastic scattering and Drell-Yan data at lower energies.

The momentum distribution of electrons from decays of heavy flavor (charm and beauty) for midrapidity |y| < 0.35 in p+p collisions at sqrt(s) = 200 GeV has been measured by the PHENIX experiment at the Relativistic Heavy Ion Collider (RHIC) over the transverse momentum range 0.3 < p_T < 9 GeV/c. Two independent methods have been used to determine the heavy flavor yields, and the results are in good agreement with each other. A fixed-order-plus-next-to-leading-log pQCD calculation agrees with the data within the theoretical and experimental uncertainties, with the data/theory ratio of 1.72 +/- 0.02^stat +/- 0.19^sys for 0.3 < p_T < 9 GeV/c. The total charm production cross section at this energy has also been deduced to be sigma_(c c^bar) = 567 +/- 57^stat +/- 224^sys micro barns.

The production cross sections of the prompt charmed mesons D$^0$, D$^+$, D$^{*+}$ and D$_s$ were measured at mid-rapidity in p-Pb collisions at a centre-of-mass energy per nucleon pair $\sqrt{s_{\rm NN}}=5.02$ TeV with the ALICE detector at the LHC. D mesons were reconstructed from their decays D$^0\rightarrow{\rm K}^-\pi^+$, D$^+\rightarrow{\rm K}^-\pi^+\pi^+$, D$^{*+}\rightarrow D^0\pi^+$, D$_s^+\rightarrow\phi\pi^+\rightarrow{\rm K}^-{\rm K}^+\pi^+$, and their charge conjugates. The $p_{\rm T}$-differential production cross sections were measured at mid-rapidity in the interval $1<p_{\rm T}<24$ GeV/$c$ for D$^0$, D$^+$ and D$^{*+}$ mesons and in $2<p_{\rm T}<12$ GeV/$c$ for D$_s$ mesons, using an analysis method based on the selection of decay topologies displaced from the interaction vertex. The production cross sections of the D$^0$, D$^+$ and D$^{*+}$ mesons were also measured in three $p_{\rm T}$ intervals as a function of the rapidity $y_{\rm cms}$ in the centre-of-mass system in $-1.26<y_{\rm cms}<0.34$. In addition, the prompt D$^0$ cross section was measured in pp collisions at $\sqrt{s}=7$ TeV and p-Pb collisions at $\sqrt{s_{\rm NN}}=5.02$ TeV down to $p_{\rm T}=0$ using an analysis technique that is based on the estimation and subtraction of the combinatorial background, without reconstruction of the D$^0$ decay vertex. The nuclear modification factor $R_{\rm pPb}(p_{\rm T})$, defined as the ratio of the $p_{\rm T}$-differential D-meson cross section in p-Pb collisions and that in pp collisions scaled by the mass number of the Pb nucleus, was calculated for the four D-meson species and found to be compatible with unity within experimental uncertainties. The results are compared to theoretical calculations that include cold-nuclear-matter effects and to transport model calculations incorporating the interactions of charm quarks with an expanding deconfined medium.

The momentum distribution of electrons from semi-leptonic decays of charm and bottom for mid-rapidity |y|<0.35 in p+p collisions at sqrt(s)=200 GeV is measured by the PHENIX experiment at the Relativistic Heavy Ion Collider (RHIC) over the transverse momentum range 2 < p_T < 7 GeV/c. The ratio of the yield of electrons from bottom to that from charm is presented. The ratio is determined using partial D/D^bar --> e^{+/-} K^{-/+} X (K unidentified) reconstruction. It is found that the yield of electrons from bottom becomes significant above 4 GeV/c in p_T. A fixed-order-plus-next-to-leading-log (FONLL) perturbative quantum chromodynamics (pQCD) calculation agrees with the data within the theoretical and experimental uncertainties. The extracted total bottom production cross section at this energy is \sigma_{b\b^bar}= 3.2 ^{+1.2}_{-1.1}(stat) ^{+1.4}_{-1.3}(syst) micro b.

We report on the inclusive production cross sections of J/$\psi$, $\psi$(2S), $\Upsilon$(1S), $\Upsilon$(2S) and $\Upsilon$(3S), measured at forward rapidity with the ALICE detector in pp collisions at a center-of-mass energy $\sqrt{s}=8$ TeV. The analysis is based on data collected at the LHC and corresponds to an integrated luminosity of 1.28 pb$^{-1}$. Quarkonia are reconstructed in the dimuon-decay channel. The differential production cross sections are measured as a function of the transverse momentum $p_{\rm T}$ and rapidity $y$, over the $p_{\rm T}$ ranges $0<p_{\rm T}<20$ GeV/$c$ for J/$\psi$, $0<p_{\rm T}<12$ GeV/$c$ for all other resonances, and for $2.5<y<4$. The cross sections, integrated over $p_{\rm T}$ and $y$, and assuming unpolarized quarkonia, are $\sigma_{{\rm J}/\psi} = 8.98\pm0.04\pm0.82$ $\mu$b, $\sigma_{\psi{\rm (2S)}} = 1.23\pm0.08\pm0.22$ $\mu$b, $\sigma_{\Upsilon{\rm(1S)}} = 71\pm6\pm7$ nb, $\sigma_{\Upsilon{\rm(2S)}} = 26\pm5\pm4$ nb and $\sigma_{\Upsilon{\rm(3S)}} = 9\pm4\pm1$ nb, where the first uncertainty is statistical and the second one is systematic. These values agree, within at most $1.4\sigma$, with measurements performed by the LHCb collaboration in the same rapidity range.

The production of $\Upsilon$ mesons in Pb-Pb collisions at a centre-of-mass energy per nucleon pair $\sqrt{s_{\rm NN}}$ = 5 TeV is measured with the muon spectrometer of the ALICE detector at the LHC. The yields as well as the nuclear modification factors are determined in the forward rapidity region $2.5<y<4.0$, as a function of rapidity, transverse momentum and collision centrality. The results show that the production of the $\Upsilon$(1S) meson is suppressed by a factor of about three with respect to the production in proton-proton collisions. For the first time, a significant signal for the $\Upsilon$(2S) meson is observed at forward rapidity, indicating a suppression stronger by about a factor 2-3 with respect to the ground state. The measurements are compared with transport, hydrodynamic, comover and statistical hadronisation model calculations.