Measurements of the differential production cross-sections of prompt and non-prompt $J/\psi$ and $\psi(2$S$)$ mesons with transverse momenta between 8 and 360 GeV and rapidity in the range $|y|<2$ are reported. Furthermore, measurements of the non-prompt fractions of $J/\psi$ and $\psi(2$S$)$, and the prompt and non-prompt $\psi(2$S$)$-to-$J/\psi$ production ratios, are presented. The analysis is performed using 140 fb$^{-1}$ of $\sqrt{s}=13$ TeV $pp$ collision data recorded by the ATLAS detector at the LHC during the years 2015-2018.

The production cross-sections of $J/\psi$ mesons in proton-proton collisions at a centre-of-mass energy of $\sqrt{s}=5$ TeV are measured using a data sample corresponding to an integrated luminosity of $9.13\pm0.18~\text{pb}^{-1}$, collected by the LHCb experiment. The cross-sections are measured differentially as a function of transverse momentum, $p_{\text{T}}$, and rapidity, $y$, and separately for $J/\psi$ mesons produced promptly and from beauty hadron decays (nonprompt). With the assumption of unpolarised $J/\psi$ mesons, the production cross-sections integrated over the kinematic range $0<p_{\text{T}}<20~\text{GeV}/c$ and $2.0<y<4.5$ are $8.154\pm0.010\pm0.283~\mu\text{b}$ for prompt $J/\psi$ mesons and $0.820\pm0.003\pm0.034~\mu\text{b}$ for nonprompt $J/\psi$ mesons, where the first uncertainties are statistical and the second systematic. These cross-sections are compared with those at $\sqrt{s}=8$ TeV and $13$ TeV, and are used to update the measurement of the nuclear modification factor in proton-lead collisions for $J/\psi$ mesons at a centre-of-mass energy per nucleon pair of $\sqrt{s_{\text{NN}}}=5$ TeV. The results are compared with theoretical predictions.

Inclusive J/$\psi$ production is studied in minimum-bias proton-proton collisions at a centre-of-mass energy of $\sqrt{s}$ = 5.02 TeV by ALICE at the CERN LHC. The measurement is performed at mid-rapidity ($|y| < 0.9$) in the dielectron decay channel down to zero transverse momentum $p_{\rm T}$, using a data sample corresponding to an integrated luminosity of $L_{\rm int} = 19.4 \pm$ 0.4 nb$^{-1}$. The measured $p_{\rm T}$-integrated inclusive J/$\psi$ production cross section is d$\sigma$/d$y$ = 5.64 $\pm$ 0.22 (stat.) $\pm 0.33$ (syst.) $\pm 0.12$ (lumi.) $\mu$b. The $p_{\rm T}$-differential cross section d$^{2} \sigma$/d$p_{\rm T}$d$y$ is measured in the $p_{\rm T}$ range 0$-$10 GeV/$c$ and compared with state-of-the-art perturbative QCD calculations. The J/$\psi$ $\langle p_{\rm T} \rangle$ and $\langle p_{\rm T}^{2} \rangle$ are extracted and compared with results obtained at other collision energies.

We report on the measurement of the inclusive J/$\psi$ polarization parameters in pp collisions at a center of mass energy $\sqrt{s} = 8$ TeV with the ALICE detector at the LHC. The analysis is based on a data sample corresponding to an integrated luminosity of 1.23 pb$^{-1}$. J/$\psi$ resonances are reconstructed in their di-muon decay channel in the rapidity interval $2.5 < y < 4.0$ and over the transverse-momentum interval $2 < p_{\rm T} < 15$ GeV/$c$. The three polarization parameters ($\lambda_\theta$, $\lambda_\varphi$, $\lambda_{\theta\varphi}$) are measured as a function of $p_{\rm T}$ both in the helicity and Collins-Soper reference frames. The measured J/$\psi$ polarization parameters are found to be compatible with zero within uncertainties, contrary to expectations from all available predictions. The results are compared with the measurement in pp collisions at $\sqrt{s} = 7$ TeV.

The nuclear modification factors of J/$\psi$ and $\psi$(2S) mesons are measured in PbPb collisions at a centre-of-mass energy per nucleon pair of $\sqrt{s_{\mathrm{NN}}} =$ 5.02 TeV. The analysis is based on PbPb and pp data samples collected by CMS at the LHC in 2015, corresponding to integrated luminosities of 464 $\mu$b$^{-1}$ and 28 pb$^{-1}$, respectively. The measurements are performed in the dimuon rapidity range of $|y| <$ 2.4 as a function of centrality, rapidity, and transverse momentum (p$_\mathrm{T}$) from p$_\mathrm{T}=$ 3 GeV/$c$ in the most forward region and up to 50 GeV/$c$. Both prompt and nonprompt (coming from b hadron decays) mesons are observed to be increasingly suppressed with centrality, with a magnitude similar to the one observed at $\sqrt{s_{\mathrm{NN}}}=$ 2.76 TeV for the two J/$\psi$ meson components. No dependence on rapidity is observed for either prompt or nonprompt J/$\psi$ mesons. An indication of a lower prompt J/$\psi$ meson suppression at p$_\mathrm{T} >$ 25 GeV/$c$ is seen with respect to that observed at intermediate p$_\mathrm{T}$. The prompt $\psi$(2S) meson yield is found to be more suppressed than that of the prompt J/$\psi$ mesons in the entire p$_\mathrm{T}$ range.

We present results on transverse momentum ($p_{\rm T}$) and rapidity ($y$) differential production cross sections, mean transverse momentum and mean transverse momentum square of inclusive J/$\psi$ and $\psi(2S)$ at forward rapidity ($2.5<y<4$) as well as $\psi(2S)$-to-J/$\psi$ cross section ratios. These quantities are measured in pp collisions at center of mass energies $\sqrt{s}=5.02$ and 13 TeV with the ALICE detector. Both charmonium states are reconstructed in the dimuon decay channel, using the muon spectrometer. A comprehensive comparison to inclusive charmonium cross sections measured at $\sqrt{s}=2.76$, 7 and 8 TeV is performed. A comparison to non-relativistic quantum chromodynamics and fixed-order next-to-leading logarithm calculations, which describe prompt and non-prompt charmonium production respectively, is also presented. A good description of the data is obtained over the full $p_{\rm T}$ range, provided that both contributions are summed. In particular, it is found that for $p_{\rm T}>15$ GeV/$c$ the non-prompt contribution reaches up to 50% of the total charmonium yield.

The relative modification of the prompt psi(2S) and J/psi yields from pp to PbPb collisions, at the center of mass energy of 5.02 TeV per nucleon pair, is presented. The analysis is based on pp and PbPb data samples collected by the CMS experiment at the LHC in 2015, corresponding to integrated luminosities of 28.0 inverse picobarns and 464 inverse microbarns, respectively. The double ratio of measured yields of prompt charmonia reconstructed through their decays into muon pairs, (N[psi(2S)]/N[J/psi])[PbPb] / (N[psi(2S)]/N[J/psi])[pp], is determined as a function of PbPb collision centrality and charmonium transverse momentum pt, in two kinematic intervals: abs(y) < 1.6 covering 6.5 < pt < 30 GeV/c and 1.6 < abs(y) < 2.4 covering 3 < pt < 30 GeV/c. The centrality-integrated double ratios are 0.36 +/- 0.08 (stat) +/-0.05 (syst) in the first interval and 0.24 +/- 0.22 (stat) +/- 0.09 (syst) in the second. The double ratio is lower than unity in all the measured bins, suggesting that the psi(2S) yield is more suppressed than the J/psi yield in the explored phase space.

The nuclear modification factor RAA and the azimuthal anisotropy coefficient v[2] of prompt and nonprompt (i.e. those from decays of b hadrons) J/psi mesons, measured from PbPb and pp collisions at sqrt(s[NN]) = 2.76 TeV at the LHC, are reported. The results are presented in several event centrality intervals and several kinematic regions, for transverse momenta pt > 6.5 GeV/c and rapidity abs(y) < 2.4, extending down to pt = 3 GeV/c in the 1.6 < abs(y) < 2.4 range. The v[2] of prompt J/psi is found to be nonzero, but with no strong dependence on centrality, rapidity, or pt over the full kinematic range studied. The measured v[2] of nonprompt J/psi is consistent with zero. The RAA of prompt J/psi exhibits a suppression that increases from peripheral to central collisions but does not vary as a function of either y or pt in the fiducial range. The nonprompt J/psi RAA shows a suppression which becomes stronger as rapidity or pt increase. The v[2] and nuclear suppression of open and hidden charm, and of open charm and beauty, are compared.

We present a measurement of inclusive J/$\psi$ production in p-Pb collisions at $\sqrt{s_{\rm NN}}$ = 5.02 TeV as a function of the centrality of the collision, as estimated from the energy deposited in the Zero Degree Calorimeters. The measurement is performed with the ALICE detector down to zero transverse momentum, $p_{\rm T}$, in the backward ($-4.46 < y_{\rm cms} < -2.96$) and forward ($2.03 < y_{\rm cms} < 3.53$) rapidity intervals in the dimuon decay channel and in the mid-rapidity region ($-1.37 < y_{\rm cms} < 0.43$) in the dielectron decay channel. The backward and forward rapidity intervals correspond to the Pb-going and p-going direction, respectively. The $p_{\rm T}$-differential J/$\psi$ production cross section at backward and forward rapidity is measured for several centrality classes, together with the corresponding average $p_{\rm T}$ and $p^2_{\rm T}$ values. The nuclear modification factor, $Q_{\rm pPb}$, is presented as a function of centrality for the three rapidity intervals, and, additionally, at backward and forward rapidity, as a function of $p_{\rm T}$ for several centrality classes. At mid- and forward rapidity, the J/$\psi$ yield is suppressed up to 40% compared to that in pp interactions scaled by the number of binary collisions. The degree of suppression increases towards central p-Pb collisions at forward rapidity, and with decreasing $p_{\rm T}$ of the J/$\psi$. At backward rapidity, the $Q_{\rm pPb}$ is compatible with unity within the total uncertainties, with an increasing trend from peripheral to central p-Pb collisions.

Prompt D meson and non-prompt J/$\psi$ yields are studied as a function of the multiplicity of charged particles produced in inelastic proton-proton collisions at a centre-of-mass energy of $\sqrt{s}=7$ TeV. The results are reported as a ratio between yields in a given multiplicity interval normalised to the multiplicity-integrated ones (relative yields). They are shown as a function of the multiplicity of charged particles normalised to the average value for inelastic collisions (relative charged-particle multiplicity). D$^0$, D$^+$ and D$^{*+}$ mesons are measured in five $p_{\rm T}$ intervals from 1 to 20 GeV/$c$ and for $|y|<0.5$ via their hadronic decays. The D-meson relative yield is found to increase with increasing charged-particle multiplicity. For events with multiplicity six times higher than the average multiplicity of inelastic collisions, a yield enhancement of a factor about 15 relative to the multiplicity-integrated yield in inelastic collisions is observed. The yield enhancement is independent of transverse momentum within the uncertainties of the measurement. The D$^0$-meson relative yield is also measured as a function of the relative multiplicity at forward pseudorapidity. The non-prompt J/$\psi$, i.e. the B hadron, contribution to the inclusive J/$\psi$ production is measured in the di-electron decay channel at central rapidity. It is evaluated for $p_{\rm T}>1.3$ GeV/$c$ and $|y|<0.9$, and extrapolated to $p_{\rm T}>0$. The fraction of non-prompt J/$\psi$ in the inclusive J/$\psi$ yields shows no dependence on the charged-particle multiplicity at central rapidity. Charm and beauty hadron relative yields exhibit a similar increase with increasing charged-particle multiplicity. The measurements are compared to PYTHIA 8, EPOS 3 and percolation calculations.