The measurement of direct photons from Au$+$Au collisions at $\sqrt{s_{_{NN}}}=39$ and 62.4 GeV in the transverse-momentum range $0.4<p_T<3$ Gev/$c$ is presented by the PHENIX collaboration at the Relativistic Heavy Ion Collider. A significant direct-photon yield is observed in both collision systems. A universal scaling is observed when the direct-photon $p_T$ spectra for different center-of-mass energies and for different centrality selections at $\sqrt{s_{_{NN}}}=62.4$ GeV is scaled with $(dN_{\rm ch}/d\eta)^{\alpha}$ for $\alpha=1.21{\pm}0.04$. This scaling also holds true for direct-photon spectra from Au$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV measured earlier by PHENIX, as well as the spectra from Pb$+$Pb at $\sqrt{s_{_{NN}}}=2760$ GeV published by ALICE. The scaling power $\alpha$ seems to be independent of $p_T$, center of mass energy, and collision centrality. The spectra from different collision energies have a similar shape up to $p_T$ of 2 GeV/$c$. The spectra have a local inverse slope $T_{\rm eff}$ increasing with $p_T$ of $0.174\pm0.018$ GeV/$c$ in the range $0.4<p_T<1.3$ GeV/$c$ and increasing to $0.289\pm0.024$ GeV/$c$ for $0.9<p_T<2.1$ GeV/$c$. The observed similarity of low-$p_T$ direct-photon production from $\sqrt{s_{_{NN}}}= 39$ to 2760 GeV suggests a common source of direct photons for the different collision energies and event centrality selections, and suggests a comparable space-time evolution of direct-photon emission.

The PHENIX experiment has measured electrons and positrons at midrapidity from the decays of hadrons containing charm and bottom quarks produced in d+Au and p+p collisions at sqrt(s_NN)=200 GeV at the Relativistic Heavy Ion Collider, in the transverse-momentum range 0.85 < pT < 8.5 GeV/c. In central d+Au collisions, the nuclear modification factor R_dA at 1.5 < pT < 5 GeV/c displays evidence of enhancement of these electrons, relative to those produced in p+p collisions, and shows that the mass-dependent Cronin enhancement observed at RHIC extends to the heavy-D-meson family. A comparison with the neutral-pion data suggests that the difference in cold-nuclear-matter effects on light- and heavy-flavor mesons could contribute to the observed differences between the pi0 and heavy-flavor-electron nuclear modification factor R_AA.

Production of $\pi^0$ and $\eta$ mesons has been measured at midrapidity in Cu$+$Au collisions at $\sqrt{s_{_{NN}}}$=200 GeV. Measurements were performed in $\pi^0(\eta)\rightarrow\gamma\gamma$ decay channel in the 1(2)-20 GeV/$c$ transverse momentum range. A strong suppression is observed for $\pi^0$ and $\eta$ meson production at high transverse momentum in central Cu$+$Au collisions relative to the $p$$+$$p$ results scaled by the number of nucleon-nucleon collisions. In central collisions the suppression is similar to Au$+$Au with comparable nuclear overlap. The $\eta/\pi^0$ ratio measured as a function of transverse momentum is consistent with $m_T$-scaling parameterization down to $p_T=$2 GeV/$c$, its asymptotic value is constant and consistent with Au$+$Au and $p$$+$$p$ and does not show any significant dependence on collision centrality. Similar results were obtained in hadron-hadron, hadron-nucleus, and nucleus-nucleus collisions as well as in $e^+e^-$ collisions in a range of collision energies $\sqrt{s_{_{NN}}}=$3--1800 GeV. This suggests that the quark-gluon-plasma medium produced in Cu$+$Cu collisions either does not affect the jet fragmentation into light mesons or it affects the $\pi^0$ and $\eta$ the same way.

We present measurements of the J/psi invariant yields in sqrt(s_NN)=39 and 62.4 GeV Au+Au collisions at forward rapidity (1.2<|y|<2.2). Invariant yields are presented as a function of both collision centrality and transverse momentum. Nuclear modifications are obtained for central relative to peripheral Au+Au collisions (R_CP) and for various centrality selections in Au+Au relative to scaled p+p cross sections obtained from other measurements (R_AA). The observed suppression patterns at 39 and 62.4 GeV are quite similar to those previously measured at 200 GeV. This similar suppression presents a challenge to theoretical models that contain various competing mechanisms with different energy dependencies, some of which cause suppression and others enhancement.

Measurements of anisotropic flow Fourier coefficients ($v_n$) for inclusive charged particles and identified hadrons $\pi^{\pm}$, $K^{\pm}$, $p$, and $\bar{p}$ produced at midrapidity in Cu+Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV are presented. The data were collected in 2012 by the PHENIX experiment at the Relativistic Heavy Ion Collider (RHIC). The particle azimuthal distributions with respect to different order symmetry planes $\Psi_n$, for $n$~=~1, 2, and 3 are studied as a function of transverse momentum $p_T$ over a broad range of collisions centralities. Mass ordering, as expected from hydrodynamic flow, is observed for all three harmonics. The charged-particle results are compared to hydrodynamical and transport model calculations. We also compare these Cu$+$Au results with those in Cu$+$Cu and Au$+$Au collisions at the same $\sqrt{s_{_{NN}}}$, and find that the $v_2$ and $v_3$, as a function of transverse momentum, follow a common scaling with $1/(\varepsilon_n N_{\rm part}^{1/3})$.

The PHENIX collaboration has measured high-$p_T$ dihadron correlations in $p$$+$$p$, $p$$+$Al, and $p$$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV. The correlations arise from inter- and intra-jet correlations and thus have sensitivity to nonperturbative effects in both the initial and final states. The distributions of $p_{\rm out}$, the transverse momentum component of the associated hadron perpendicular to the trigger hadron, are sensitive to initial and final state transverse momenta. These distributions are measured multi-differentially as a function of $x_E$, the longitudinal momentum fraction of the associated hadron with respect to the trigger hadron. The near-side $p_{\rm out}$ widths, sensitive to fragmentation transverse momentum, show no significant broadening between $p$$+$Au, $p$$+$Al, and $p$$+$$p$. The away-side nonperturbative $p_{\rm out}$ widths are found to be broadened in $p$$+$Au when compared to $p$$+$$p$; however, there is no significant broadening in $p$$+$Al compared to $p$$+$$p$ collisions. The data also suggest that the away-side $p_{\rm out}$ broadening is a function of $N_{\rm coll}$, the number of binary nucleon-nucleon collisions, in the interaction. The potential implications of these results with regard to initial and final state transverse momentum broadening and energy loss of partons in a nucleus, among other nuclear effects, are discussed.

The cross section of bottom quark-antiquark ($b\bar{b}$) production in $p$+$p$ collisions at $\sqrt{s}=510$ GeV is measured with the PHENIX detector at the Relativistic Heavy Ion Collider. The results are based on the yield of high mass, like-sign muon pairs measured within the PHENIX muon arm acceptance ($1.2<|y|<2.2$). The $b\bar{b}$ signal is extracted from like-sign dimuons by utilizing the unique properties of neutral $B$ meson oscillation. We report a differential cross section of $d\sigma_{b\bar{b}\rightarrow \mu^\pm\mu^\pm}/dy = 0.16 \pm 0.01~(\mbox{stat}) \pm 0.02~(\mbox{syst}) \pm 0.02~(\mbox{global})$ nb for like-sign muons in the rapidity and $p_T$ ranges $1.2<|y|<2.2$ and $p_T>1$ GeV/$c$, and dimuon mass of 5--10 GeV/$c^2$. The extrapolated total cross section at this energy for $b\bar{b}$ production is $13.1 \pm 0.6~(\mbox{stat}) \pm 1.5~(\mbox{syst}) \pm 2.7~(\mbox{global})~\mu$b. The total cross section is compared to a perturbative quantum chromodynamics calculation and is consistent within uncertainties. The azimuthal opening angle between muon pairs from $b\bar{b}$ decays and their $p_T$ distributions are compared to distributions generated using {\sc ps pythia 6}, which includes next-to-leading order processes. The azimuthal correlations and pair $p_T$ distribution are not very well described by {\sc pythia} calculations, but are still consistent within uncertainties. Flavor creation and flavor excitation subprocesses are favored over gluon splitting.

We present measurements from the PHENIX experiment of large parity-violating single spin asymmetries of high transverse momentum electrons and positrons from $W^\pm/Z$ decays, produced in longitudinally polarized $p$$+$$p$ collisions at center of mass energies of $\sqrt{s}$=500 and 510~GeV. These asymmetries allow direct access to the anti-quark polarized parton distribution functions due to the parity-violating nature of the $W$-boson coupling to quarks and anti-quarks. The results presented are based on data collected in 2011, 2012, and 2013 with an integrated luminosity of 240 pb$^{-1}$, which exceeds previous PHENIX published results by a factor of more than 27. These high $Q^2$ data provide an important addition to our understanding of anti-quark parton helicity distribution functions.

We report on $J/\psi$ production from asymmetric Cu+Au heavy-ion collisions at $\sqrt{s_{_{NN}}}$=200 GeV at the Relativistic Heavy Ion Collider at both forward (Cu-going direction) and backward (Au-going direction) rapidities. The nuclear modification of $J/\psi$ yields in Cu$+$Au collisions in the Au-going direction is found to be comparable to that in Au$+$Au collisions when plotted as a function of the number of participating nucleons. In the Cu-going direction, $J/\psi$ production shows a stronger suppression. This difference is comparable in magnitude and has the same sign as the difference expected from shadowing effects due to stronger low-$x$ gluon suppression in the larger Au nucleus. The relative suppression is opposite to that expected from hot nuclear matter dissociation, since a higher energy density is expected in the Au-going direction.

The PHENIX experiment has measured the spin alignment for inclusive $J/\psi\rightarrow e^{+}e^{-}$ decays in $p$+$p$ collisions at $\sqrt{s}=510$ GeV at midrapidity. The angular distributions have been measured in three different polarization frames, and the three decay angular coefficients have been extracted in a full two-dimensional analysis. Previously, PHENIX saw large longitudinal net polarization at forward rapidity at the same collision energy. This analysis at midrapidity, complementary to the previous PHENIX results, sees no sizable polarization in the measured transverse momentum range of $0.0<p_T<10.0$ GeV/$c$. The results are consistent with a previous one-dimensional analysis at midrapidity at $\sqrt{s}=200$ GeV. The transverse-momentum-dependent cross section for midrapidity $J/\psi$ production has additionally been measured, and after comparison to world data we find a simple logarithmic dependence of the cross section on $\sqrt{s}$.

We report the first measurement of the fraction of $J/\psi$ mesons coming from $B$-meson decay ($F_{B{\rightarrow}J/\psi}$) in $p$+$p$ collisions at $\sqrt{s}=$ 510 GeV. The measurement is performed using the forward silicon vertex detector and central vertex detector at PHENIX, which provide precise tracking and distance-of-closest-approach determinations, enabling the statistical separation of $J/\psi$ due to $B$-meson decays from prompt $J/\psi$. The measured value of $F_{B{\rightarrow}J/\psi}$ is 8.1\%$\pm$2.3\% (stat)$\pm$1.9\% (syst) for $J/\psi$ with transverse momenta $0<p_T<5$ GeV/$c$ and rapidity $1.2<|y|<2.2$. The measured fraction $F_{B{\rightarrow}J/\psi}$ at PHENIX is compared to values measured by other experiments at higher center of mass energies and to fixed-order-next-to-leading-logarithm and color-evaporation-model predictions. The $b\bar{b}$ cross section per unit rapidity ($d\sigma/dy(pp{\rightarrow}b\bar{b})$) extracted from the obtained $F_{B{\rightarrow}J/\psi}$ and the PHENIX inclusive $J/\psi$ cross section measured at 200 GeV scaled with color-evaporation-model calculations, at the mean $B$ hadron rapidity $y={\pm}1.7$ in 510 GeV $p$$+$$p$ collisions, is $3.63^{+1.92}_{-1.70}\mu$b, and it is consistent with the fixed-order-next-to-leading-logarithm calculations.

The PHENIX experiment at the Relativistic Heavy Ion Collider measured $\pi^0$ and $\eta$ mesons at midrapidity in U$+$U collisions at $\sqrt{s_{_{NN}}}=192$ GeV in a wide transverse momentum range. Measurements were performed in the $\pi^0(\eta)\rightarrow\gamma\gamma$ decay modes. A strong suppression of $\pi^0$ and $\eta$ meson production at high transverse momentum was observed in central U$+$U collisions relative to binary scaled $p$$+$$p$ results. Yields of $\pi^0$ and $\eta$ mesons measured in U$+$U collisions show similar suppression pattern to the ones measured in Au$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV for similar numbers of participant nucleons. The $\eta$/$\pi^0$ ratios do not show dependence on centrality or transverse momentum, and are consistent with previously measured values in hadron-hadron, hadron-nucleus, nucleus-nucleus, and $e^+e^-$ collisions.

The PHENIX experiment at RHIC has measured the centrality dependence of the direct photon yield from Au$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV down to $p_T=0.4$ GeV/$c$. Photons are detected via photon conversions to $e^+e^-$ pairs and an improved technique is applied that minimizes the systematic uncertainties that usually limit direct photon measurements, in particular at low $p_T$. We find an excess of direct photons above the $N_{\rm coll}$-scaled yield measured in $p$$+$$p$ collisions. This excess yield is well described by an exponential distribution with an inverse slope of about 240 MeV/$c$ in the $p_T$ range from 0.6--2.0 GeV/$c$. While the shape of the $p_T$ distribution is independent of centrality within the experimental uncertainties, the yield increases rapidly with increasing centrality, scaling approximately with $N_{\rm part}^\alpha$, where $\alpha=1.48{\pm}0.08({\rm stat}){\pm}0.04({\rm syst})$.

The PHENIX experiment at the Relativistic Heavy Ion Collider has measured 2nd and 3rd order Fourier coefficients of the azimuthal distributions of direct photons emitted at midrapidity in Au$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV for various collision centralities. Combining two different analysis techniques, results were obtained in the transverse momentum range of $0.4<p_{T}<4.0$ GeV/$c$. At low $p_T$ the second-order coefficients, $v_2$, are similar to the ones observed in hadrons. Third order coefficients, $v_3$, are nonzero and almost independent of centrality. These new results on $v_2$ and $v_3$, combined with previously published results on yields, are compared to model calculations that provide yields and asymmetries in the same framework. Those models are challenged to explain simultaneously the observed large yield and large azimuthal anisotropies.

We present a systematic study of charged pion and kaon interferometry in Au$+$Au collisions at $\sqrt{s_{_{NN}}}$=200 GeV. The kaon mean source radii are found to be larger than pion radii in the outward and longitudinal directions for the same transverse mass; this difference increases for more central collisions. The azimuthal-angle dependence of the radii was measured with respect to the second-order event plane and similar oscillations of the source radii were found for pions and kaons. Hydrodynamic models qualitatively describe the similar oscillations of the mean source radii for pions and kaons, but they do not fully describe the transverse-mass dependence of the oscillations.

We present measured J/psi production rates in d+Au collisions at sqrt(s_NN) = 200 GeV over a broad range of transverse momentum (p_T=0-14 GeV/c) and rapidity (-2.2<y<2.2). We construct the nuclear-modification factor R_dAu for these kinematics and as a function of collision centrality (related to impact parameter for the R_dAu collision). We find that the modification is largest for collisions with small impact parameters, and observe a suppression (R_dAu<1) for p_T<4 GeV/c at positive rapidities. At negative rapidity we observe a suppression for p_T<2 GeV/c then an enhancement (R_dAu>1) for p_T>2 GeV/c. The observed enhancement at negative rapidity has implications for the observed modification in heavy-ion collisions at high p_T.

We report $e^\pm-\mu^\mp$ pair yield from charm decay measured between midrapidity electrons ($|\eta|<0.35$ and $p_T>0.5$ GeV/$c$) and forward rapidity muons ($1.4<\eta<2.1$ and $p_T>1.0$ GeV/$c$) as a function of $\Delta\phi$ in both $p$$+$$p$ and in $d$+Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV. Comparing the $p$$+$$p$ results with several different models, we find the results are consistent with a total charm cross section $\sigma_{c\bar{c}} =$ 538 $\pm$ 46 (stat) $\pm$ 197 (data syst) $\pm$ 174 (model syst) $\mu$b. These generators also indicate that the back-to-back peak at $\Delta\phi = \pi$ is dominantly from the leading order contributions (gluon fusion), while higher order processes (flavor excitation and gluon splitting) contribute to the yield at all $\Delta\phi$. We observe a suppression in the pair yield per collision in $d$+Au. We find the pair yield suppression factor for $2.7<\Delta\phi<3.2$ rad is $J_{dA}$ = 0.433 $\pm$ 0.087 (stat) $\pm$ 0.135 (syst), indicating cold nuclear matter modification of $c\bar{c}$ pairs.

We report on the first measurement of double-spin asymmetry, A_LL, of electrons from the decays of hadrons containing heavy flavor in longitudinally polarized p+p collisions at sqrt(s)=200 GeV for p_T= 0.5 to 3.0 GeV/c. The asymmetry was measured at mid-rapidity (|eta|<0.35) with the PHENIX detector at the Relativistic Heavy Ion Collider. The measured asymmetries are consistent with zero within the statistical errors. We obtained a constraint for the polarized gluon distribution in the proton of |Delta g/g(log{_10}x= -1.6^+0.5_-0.4, {mu}=m_T^c)|^2 < 0.033 (1 sigma), based on a leading-order perturbative-quantum-chromodynamics model, using the measured asymmetry.

The PHENIX experiment at the Relativistic Heavy Ion Collider has measured the differential cross section, mean transverse momentum, mean transverse momentum squared of inclusive $J/\psi$ and cross-section ratio of $\psi(2S)$ to $J/\psi$ at forward rapidity in \pp collisions at \sqrts = 510 GeV via the dimuon decay channel. Comparison is made to inclusive $J/\psi$ cross sections measured at \sqrts = 200 GeV and 2.76--13 TeV. The result is also compared to leading-order nonrelativistic QCD calculations coupled to a color-glass-condensate description of the low-$x$ gluons in the proton at low transverse momentum ($p_T$) and to next-to-leading order nonrelativistic QCD calculations for the rest of the $p_T$ range. These calculations overestimate the data at low $p_T$. While consistent with the data within uncertainties above $\approx3$ GeV/$c$, the calculations are systematically below the data. The total cross section times the branching ratio is BR $d\sigma^{J/\psi}_{pp}/dy (1.2<|y|<2.2, 0<p_T<10~\mbox{GeV/$c$}) =$ 54.3 $\pm$ 0.5 (stat) $\pm$ 5.5 (syst) nb.

In 2015, the PHENIX collaboration has measured very forward ($\eta>6.8$) single-spin asymmetries of inclusive neutrons in transversely polarized proton-proton and proton-nucleus collisions at a center of mass energy of 200 GeV. A previous publication from this data set concentrated on the nuclear dependence of such asymmetries. In this measurement the explicit transverse-momentum dependence of inclusive neutron single spin asymmetries for proton-proton collisions is extracted using a bootstrapping-unfolding technique on the transverse momenta. This explicit transverse-momentum dependence will help improve the understanding of the mechanisms that create these asymmetries.

The PHENIX experiment has measured the production of neutral pions in Au+Au collisions at sqrt(s_NN)=200 GeV. The new data offer a fourfold increase in recorded luminosity, providing higher precision and a larger reach in transverse momentum, p_T, to 20 GeV/c. The production ratio of eta/pi^0 is 0.46+/-0.01(stat)+/-0.05(syst), constant with p_T and collision centrality. The observed ratio is consistent with earlier measurements, as well as with the p+p and d+Au values. The production of pi^0 is suppressed by a factor of 5, as in earlier findings. However, with the improved statistical precision a small but significant rise of the nuclear modification factor, R_AA, vs p_T, with a slope of 0.0106+/-^(0.0034)_(0.0029)[GeV/c]^-1, is discernible in central collisions. A phenomenological extraction of the average fractional parton energy loss shows a decrease with increasing p_T. To study the path length dependence of suppression, the pi^0 yield was measured at different angles with respect to the event plane; a strong azimuthal dependence of the pi^0 R_AA is observed. The data are compared to theoretical models of parton energy loss as a function of the path length, L, in the medium. Models based on pQCD are insufficient to describe the data, while a hybrid model utilizing pQCD for the hard interactions and AdS/CFT for the soft interactions is consistent with the data.

The transverse momentum (p_T) spectra and ratios of identified charged hadrons (\pi^+/-, K^+/-, p, p^bar) produced in sqrt(s_NN)=200 GeV Au+Au and d+Au collisions are reported in five different centrality classes for each collision species. The measurements of pions and protons are reported up to p_T=6 GeV/c (5 GeV/c), and the measurements of kaons are reported up to p_T=4 GeV/c (3.5 GeV/c) in Au+Au (d+Au) collisions. In the intermediate p_T region, between 2--5 GeV/c, a significant enhancement of baryon to meson ratios compared to those measured in p+p collisions is observed. This enhancement is present in both Au+Au and d+Au collisions, and increases as the collisions become more central. We compare a class of peripheral Au+Au collisions with a class of central d+Au collisions which have a comparable number of participating nucleons and binary nucleon-nucleon collisions. The p_T dependent particle ratios for these classes display a remarkable similarity, which is then discussed.

We report a measurement of $e^+e^-$ pairs from semileptonic heavy-flavor decays in $d$$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV. Exploring the mass and transverse-momentum dependence of the yield, the bottom decay contribution can be isolated from charm, and quantified by comparison to {\sc pythia} and {\sc mc@nlo} simulations. The resulting $b\bar{b}$-production cross section is $\sigma^{d{\rm Au}}_{b\bar{b}}=1.37{\pm}0.28({\rm stat}){\pm}0.46({\rm syst})$~mb, which is equivalent to a nucleon-nucleon cross section of $\sigma^{NN}_{bb}=3.4\pm0.8({\rm stat}){\pm}1.1({\rm syst})\ \mu$b.

We present results for three charmonia states (psi^prime, chi_c and J/psi) in d+Au collisions at |y|<0.35 and sqrt(s_NN)=200 GeV. We find that the modification of the psi^prime yield relative to that of the J/psi scales approximately with charged-particle multiplicity at midrapidity across p+A, d+Au, and A+A results from the Super Proton Synchrotron and the Relativistic Heavy Ion Collider. In large impact-parameter collisions we observe a similar suppression for the psi^prime and J/psi, while in small impact-parameter collisions the more weakly bound psi^prime is more strongly suppressed. Owing to the short time spent traversing the Au nucleus, the larger psi^prime suppression in central events is not explained by an increase of the nuclear absorption due to meson formation time effects.

Back-to-back hadron pair yields in d+Au and p+p collisions at sqrt(s_NN)=200 GeV were measured with the PHENIX detector at the Relativistic Heavy Ion Collider. Rapidity separated hadron pairs were detected with the trigger hadron at pseudorapidity |eta|<0.35 and the associated hadron at forward rapidity (deuteron direction, 3.0<eta<3.8). Pairs were also detected with both hadrons measured at forward rapidity; in this case the yield of back-to-back hadron pairs in d+Au collisions with small impact parameters is observed to be suppressed by a factor of 10 relative to p+p collisions. The kinematics of these pairs is expected to probe partons in the Au nucleus with low fraction x of the nucleon momenta, where the gluon densities rise sharply. The observed suppression as a function of nuclear thickness, p_T, and eta points to cold nuclear matter effects arising at high parton densities.