Yields for J/psi production in Cu+Cu collisions at sqrt (s_NN)= 200 GeV have been measured by the PHENIX experiment over the rapidity range |y| < 2.2 at transverse momenta from 0 to beyond 5 GeV/c. The invariant yield is obtained as a function of rapidity, transverse momentum and collision centrality, and compared with results in p+p and Au+Au collisions at the same energy. The Cu+Cu data provide greatly improved precision over existing Au+Au data for J/psi production in collisions with small to intermediate numbers of participants, providing a key constraint that is needed for disentangling cold and hot nuclear matter effects.

Azimuthal angle (Delta phi) correlations are presented for a broad range of transverse momentum (0.4 < pT < 10 GeV/c) and centrality (0-92%) selections for charged hadrons from di-jets in Au+Au collisions at sqrt(s_NN) = 200 GeV. With increasing pT, the away-side Delta phi distribution evolves from a broad and relatively flat shape to a concave shape, then to a convex shape. Comparisons to p+p data suggest that the away-side distribution can be divided into a partially suppressed head region centered at Delta phi ~ \pi, and an enhanced shoulder region centered at Delta phi ~ \pi \pm 1:1. The pT spectrum for the associated hadrons in the head region softens toward central collisions. The spectral slope for the shoulder region is independent of centrality and trigger pT . The properties of the near-side distributions are also modified relative to those in p + p collisions, reflected by the broadening of the jet shape in Delta phi and Delta eta, and an enhancement of the per-trigger yield. However, these modifications seem to be limited to pT < 4 GeV/c, above which both the dihadron pair shape and per-trigger yield become similar to p + p collisions. These observations suggest that both the away- and near-side distributions contain a jet fragmentation component which dominates for pT \ge 5GeV and a medium-induced component which is important for pT \le 4 GeV/c. We also quantify the role of jets at intermediate and low pT through the yield of jet-induced pairs in comparison to binary scaled p + p pair yield. The yield of jet-induced pairs is suppressed at high pair proxy energy (sum of the pT magnitudes of the two hadrons) and is enhanced at low pair proxy energy. The former is consistent with jet quenching/ the latter is consistent with the enhancement of soft hadron pairs due to transport of lost energy to lower pT.

A three-dimensional (3D) correlation function obtained from mid-rapidity, low pT pion pairs in central Au+Au collisions at sqrt(s_NN)=200 GeV is studied. The extracted model-independent source function indicates a long range tail in the directions of the pion pair transverse momentum (out) and the beam (long). Model comparisons to these distensions indicate a proper breakup time \tau_0 ~ 9 fm/c and a mean proper emission duration \Delta\tau ~ 2 fm/c, leading to sizable emission time differences (<|\Delta \tau_LCM |> ~ 12 fm/c), partly due to resonance decays. They also suggest an outside-in 'burning' of the emission source reminiscent of many hydrodynamical models.

PHENIX reports differential cross sections of $\mu\mu$ pairs from semileptonic heavy-flavor decays and the Drell-Yan production mechanism measured in $p$$+$$p$ collisions at $\sqrt{s}=200$ GeV at forward and backward rapidity ($1.2<|\eta|<2.2$). The $\mu\mu$ pairs from $c\bar{c}$, $b\bar{b}$, and Drell-Yan are separated using a simultaneous fit to unlike- and like-sign muon pair spectra in mass and $p_T$. The azimuthal opening angle correlation between the muons from $c\bar{c}$ and $b\bar{b}$ decays and the pair-$p_T$ distributions are compared to distributions generated using {\sc pythia} and {\sc powheg} models, which both include next-to-leading order processes. The measured distributions for pairs from $c\bar{c}$ are consistent with {\sc pythia} calculations. The $c\bar{c}$ data presents narrower azimuthal correlations and softer $p_T$ distributions compared to distributions generated from {\sc powheg}. The $b\bar{b}$ data are well described by both models. The extrapolated total cross section for bottom production is $3.75{\pm}0.24({\rm stat}){\pm}^{0.35}_{0.50}({\rm syst}){\pm}0.45({\rm global})$[$\mu$b], which is consistent with previous measurements at the Relativistic Heavy Ion Collider in the same system at the same collision energy, and is approximately a factor of two higher than the central value calculated with theoretical models. The measured Drell-Yan cross section is in good agreement with next-to-leading-order quantum-chromodynamics calculations.

We present the first measurements of long-range angular correlations and the transverse momentum dependence of elliptic flow $v_2$ in high-multiplicity $p$$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV. A comparison of these results with previous measurements in high-multiplicity $d$$+$Au and $^3{\rm He}$$+$Au collisions demonstrates a relation between $v_2$ and the initial collision eccentricity $\varepsilon_2$, suggesting that the observed momentum-space azimuthal anisotropies in these small systems have a collective origin and reflect the initial geometry. Good agreement is observed between the measured $v_2$ and hydrodynamic calculations for all systems, and an argument disfavoring theoretical explanations based on momentum-space domain correlations is presented. The set of measurements presented here allows us to leverage the distinct intrinsic geometry of each of these systems to distinguish between different theoretical descriptions of the long-range correlations observed in small collision systems.

Dihadron and isolated direct photon-hadron angular correlations are measured in $p$$+$$p$ collisions at $\sqrt{s}=200$ GeV. The correlations are sensitive to nonperturbative initial-state and final-state transverse momentum $k_T$ and $j_T$ in the azimuthal nearly back-to-back region $\Delta\phi\sim\pi$. In this region, transverse-momentum-dependent evolution can be studied when several different hard scales are measured. To have sensitivity to small transverse momentum scales, nonperturbative momentum widths of $p_{\rm out}$, the out-of-plane transverse momentum component perpendicular to the trigger particle, are measured. These widths are used to investigate possible effects from transverse-momentum-dependent factorization breaking. When accounting for the longitudinal momentum fraction of the away-side hadron with respect to the near-side trigger particle, the widths are found to increase with the hard scale; this is qualitatively similar to the observed behavior in Drell-Yan and semi-inclusive deep-inelastic scattering interactions. The momentum widths are also studied as a function of center-of-mass energy by comparing to previous measurements at $\sqrt{s}=510$ GeV. The nonperturbative jet widths also appear to increase with $\sqrt{s}$ at a similar $x_T$, which is qualitatively consistent to similar measurements in Drell-Yan interactions. To quantify the magnitude of any transverse-momentum-dependent factorization breaking effects, calculations will need to be performed to compare to these measurements.

During 2015 the Relativistic Heavy Ion Collider (RHIC) provided collisions of transversely polarized protons with Au and Al nuclei for the first time, enabling the exploration of transverse-single-spin asymmetries with heavy nuclei. Large single-spin asymmetries in very forward neutron production have been previously observed in transversely polarized $p$$+$$p$ collisions at RHIC, and the existing theoretical framework that was successful in describing the single-spin asymmetry in $p$$+$$p$ collisions predicts only a moderate atomic-mass-number ($A$) dependence. In contrast, the asymmetries observed at RHIC in $p$$+$$A$ collisions showed a surprisingly strong $A$ dependence in inclusive forward neutron production. The observed asymmetry in $p$$+$Al collisions is much smaller, while the asymmetry in $p$$+$Au collisions is a factor of three larger in absolute value and of opposite sign. The interplay of different neutron production mechanisms is discussed as a possible explanation of the observed $A$ dependence.

High-energy proton- and deuteron-nucleus collisions provide an excellent tool for studying a wide array of physics effects, including modifications of parton distribution functions in nuclei, gluon saturation, and color neutralization and hadronization in a nuclear environment, among others. All of these effects are expected to have a significant dependence on the size of the nuclear target and the impact parameter of the collision, also known as the collision centrality. In this article, we detail a method for determining centrality classes in p(d)+A collisions via cuts on the multiplicity at backward rapidity (i.e., the nucleus-going direction) and for determining systematic uncertainties in this procedure. For d+Au collisions at sqrt(s_NN) = 200 GeV we find that the connection to geometry is confirmed by measuring the fraction of events in which a neutron from the deuteron does not interact with the nucleus. As an application, we consider the nuclear modification factors R_{p(d)+A}, for which there is a potential bias in the measured centrality dependent yields due to auto-correlations between the process of interest and the backward rapidity multiplicity. We determine the bias correction factor within this framework. This method is further tested using the HIJING Monte Carlo generator. We find that for d+Au collisions at sqrt(s_NN)=200 GeV, these bias corrections are small and vary by less than 5% (10%) up to p_T = 10 (20) GeV. In contrast, for p+Pb collisions at sqrt(s_NN) = 5.02 TeV we find these bias factors are an order of magnitude larger and strongly p_T dependent, likely due to the larger effect of multi-parton interactions.

We report the measurement of direct photons at midrapidity in Au+Au collisions at sqrt{s_NN} = 200 GeV. The direct photon signal was extracted for the transverse-momentum range of 4 GeV/c < p_T < 22 GeV/c, using a statistical method to subtract decay photons from the inclusive-photon sample. The direct-photon nuclear-modification factor R_AA was calculated as a function of p_T for different Au+Au collision centralities using the measured p+p direct-photon spectrum and compared to theoretical predictions. R_AA was found to be consistent with unity for all centralities over the entire measured p_T range. Theoretical models that account for modifications of initial-direct-photon production due to modified-parton-distribution functions in Au and the different isospin composition of the nuclei, predict a modest change of R_AA from unity and are consistent with the data. Models with compensating effects of the quark-gluon plasma on high-energy photons, such as suppression of jet-fragmentation photons and induced-photon bremsstrahlung from partons traversing the medium, are also consistent with this measurement.

The PHENIX collaboration has measured high-$p_T$ dihadron correlations in $p$$+$$p$, $p$$+$Al, and $p$$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV. The correlations arise from inter- and intra-jet correlations and thus have sensitivity to nonperturbative effects in both the initial and final states. The distributions of $p_{\rm out}$, the transverse momentum component of the associated hadron perpendicular to the trigger hadron, are sensitive to initial and final state transverse momenta. These distributions are measured multi-differentially as a function of $x_E$, the longitudinal momentum fraction of the associated hadron with respect to the trigger hadron. The near-side $p_{\rm out}$ widths, sensitive to fragmentation transverse momentum, show no significant broadening between $p$$+$Au, $p$$+$Al, and $p$$+$$p$. The away-side nonperturbative $p_{\rm out}$ widths are found to be broadened in $p$$+$Au when compared to $p$$+$$p$; however, there is no significant broadening in $p$$+$Al compared to $p$$+$$p$ collisions. The data also suggest that the away-side $p_{\rm out}$ broadening is a function of $N_{\rm coll}$, the number of binary nucleon-nucleon collisions, in the interaction. The potential implications of these results with regard to initial and final state transverse momentum broadening and energy loss of partons in a nucleus, among other nuclear effects, are discussed.

We report the transverse single-spin asymmetries of $J/\psi$ production at forward and backward rapidity, $1.2<|y|<2.2$, as a function of $J/\psi$ transverse momentum ($p_T$) and Feynman-$x$ ($x_F$). The data analyzed were recorded by the PHENIX experiment at the Relativistic Heavy Ion Collider in 2015 from $p$$+$$p$, $p$$+$Al, and $p$$+$Au collisions with transversely polarized proton beams at $\sqrt{s_{_{NN}}}=200$ GeV. At this collision energy, single-spin asymmetries for heavy-flavor particle production of $p$$+$$p$ collisions provide access to the spin-dependent gluon distribution and higher-twist correlation functions inside the nucleon, such as the gluon Qiu-Sterman and trigluon correlation functions. Proton+nucleus collisions offer an excellent opportunity to study nuclear effects on the correlation functions. The data indicate negative asymmetries at the two-standard-deviation level in the $p$$+$Au data for $p_T<2$ GeV/$c$ at both forward and backward rapidity, while in $p$$+$$p$ and $p$$+$Al collisions the asymmetries are consistent with zero within the range of experimental uncertainties.

We present inclusive charged hadron elliptic flow v_2 measured over the pseudorapidity range |\eta| < 0.35 in Au+Au collisions at sqrt(s_NN) = 200 GeV. Results for v_2 are presented over a broad range of transverse momentum (p_T = 0.2-8.0 GeV/c) and centrality (0-60%). In order to study non-flow effects that are not correlated with the reaction plane, as well as the fluctuations of v_2, we compare two different analysis methods: (1) event plane method from two independent sub-detectors at forward (|\eta| = 3.1-3.9) and beam (|\eta| > 6.5) pseudorapidities and (2) two-particle cumulant method extracted using correlations between particles detected at midrapidity. The two event-plane results are consistent within systematic uncertainties over the measured p_T and in centrality 0-40%. There is at most 20% difference of the v_2 between the two event plane methods in peripheral (40-60%) collisions. The comparisons between the two-particle cumulant results and the standard event plane measurements are discussed.

Measurements of the differential production of electrons from open-heavy-flavor hadrons with charm- and bottom-quark content in $p$$+$$p$ collisions at $\sqrt{s}=200$ GeV are presented. The measurements proceed through displaced-vertex analyses of electron tracks from the semileptonic decay of charm and bottom hadrons using the PHENIX silicon-vertex detector. The relative contribution of electrons from bottom decays to inclusive heavy-flavor-electron production is found to be consistent with fixed-order-plus-next-to-leading-log perturbative-QCD calculations within experimental and theoretical uncertainties. These new measurements in $p$$+$$p$ collisions provide a precision baseline for comparable forthcoming measurements in A$+$A collisions.

Bose-Einstein correlations of charged kaons are measured for Au+Au collisions at sqrt(s_NN) = 200 GeV and are compared to charged pion probes, which have a larger hadronic scattering cross section. Three dimensional Gaussian source radii are extracted, along with a one-dimensional kaon emission source function. The centrality dependences of the three Gaussian radii are well described by a single linear function if N_part^1/3 with zero intercept. Imaging analysis shows a deviation from a Gaussian tail at r >~ 10 fm, although the bulk emission at lower radius is well-described by a Gaussian. The presence of a non-Gaussian tail in the kaon source reaffirms that the particle emission region in a heavy ion collision is extended, and that similar measurements with pions are not solely due to the decay of long-lived resonances.

New measurements are presented for charged hadron azimuthal correlations at mid-rapidity in Au+Au collisions at sqrt(s_NN) = 62.4 and 200 GeV. They are compared to earlier measurements obtained at sqrt(s_NN) = 130 GeV and in Pb+Pb collisions at sqrt(s_NN) = 17.2 GeV. Sizeable anisotropies are observed with centrality and transverse momentum (p_T) dependence characteristic of elliptic flow (v_2). For a broad range of centralities, the observed magnitudes and trends of the differential anisotropy, v_2(p_T), change very little over the collision energy range sqrt(s_NN) = 62-200 GeV, indicating saturation of the excitation function for v_2 at these energies. Such a saturation may be indicative of the dominance of a very soft equation of state for sqrt(s_NN) = 62-200 GeV.

We report PHENIX measurements of the correlation of a trigger hadron at intermediate transverse momentum (2.5<p_{T,trig}<4 GeV/c), with associated mesons or baryons at lower p_{T,assoc}, in Au+Au collisions at sqrt(s_NN) = 200 GeV. The jet correlations for both baryons and mesons show similar shape alterations as a function of centrality, characteristic of strong modification of the away-side jet. The ratio of jet-associated baryons to mesons for this jet increases with centrality and p_{T,assoc} and, in the most central collisions, reaches a value similar to that for inclusive measurements. This trend is incompatible with in-vacuum fragmentation, but could be due to jet-like contributions from correlated soft partons which recombine upon hadronization.

J/psi production has been measured in proton-proton collisions at sqrt(s)= 200 GeV over a wide rapidity and transverse momentum range by the PHENIX experiment at RHIC. Distributions of the rapidity and transverse momentum, along with measurements of the mean transverse momentum and total production cross section are presented and compared to available theoretical calculations. The total J/psi cross section is 3.99 +/- 0.61(stat) +/- 0.58(sys) +/- 0.40(abs) micro barns. The mean transverse momentum is 1.80 +/- 0.23(stat) +/- 0.16(sys) GeV/c.

J/Psi production in p+p collisions at sqrt(s) = 200 GeV has been Measured in the PHENIX experiment at the Relativistic Heavy Ion Collider (RHIC) over a rapidity range of -2.2 < y < 2.2 and a transverse momentum range of 0 < pT < 9 GeV/c. The statistics available allow a detailed measurement of both the pT and rapidity distributions and are sufficient to constrain production models. The total cross section times branching ratio determined for J/Psi production is B_{ll} sigma_pp^J/psi = 178 +/- 3(stat) +/- 53(syst) +/- 18(norm) nb.

The PHENIX experiement has measured the electron-positron pair mass spectrum from 0 to 8 GeV/c^2 in p+p collisions at sqrt(s)=200 GeV. The contributions from light meson decays to e^+e^- pairs have been determined based on measurements of hadron production cross sections by PHENIX. They account for nearly all e^+e^- pairs in the mass region below 1 GeV/c^2. The e^+e^- pair yield remaining after subtracting these contributions is dominated by semileptonic decays of charmed hadrons correlated through flavor conservation. Using the spectral shape predicted by PYTHIA, we estimate the charm production cross section to be 544 +/- 39(stat) +/- 142(syst) +/- 200(model) \mu b, which is consistent with QCD calculations and measurements of single leptons by PHENIX.

Differential elliptic flow (v_2) for phi mesons and (anti)deuterons (d^bar)d is measured for Au+Au collisions at sqrt(s_NN) = 200 GeV. The v_2 for phi mesons follows the trend of lighter pi^+/- and K^+/- mesons, suggesting that ordinary hadrons interacting with standard hadronic cross sections are not the primary driver for elliptic flow development. The v_2 values for (d^bar)d suggest that elliptic flow is additive for composite particles. This further validation of the universal scaling of v_2 per constituent quark for baryons and mesons suggests that partonic collectivity dominates the transverse expansion dynamics.

The PHENIX Collaboration at the Relativistic Heavy Ion Collider has measured open heavy flavor production in Cu$+$Cu collisions at $\sqrt{s_{_{NN}}}$=200 GeV through the measurement of electrons at midrapidity that originate from semileptonic decays of charm and bottom hadrons. In peripheral Cu$+$Cu collisions an enhanced production of electrons is observed relative to $p$$+$$p$ collisions scaled by the number of binary collisions. In the transverse momentum range from 1 to 5 GeV/$c$ the nuclear modification factor is $R_{AA}$$\sim$1.4. As the system size increases to more central Cu$+$Cu collisions, the enhancement gradually disappears and turns into a suppression. For $p_T>3$ GeV/$c$, the suppression reaches $R_{AA}$$\sim$0.8 in the most central collisions. The $p_T$ and centrality dependence of $R_{AA}$ in Cu$+$Cu collisions agree quantitatively with $R_{AA}$ in $d+$Au and Au$+$Au collisions, if compared at similar number of participating nucleons $\langle N_{\rm part} \rangle$.

The PHENIX experiment has studied nuclear effects in $p$$+$Al and $p$$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV on charged hadron production at forward rapidity ($1.4<\eta<2.4$, $p$-going direction) and backward rapidity ($-2.2<\eta<-1.2$, $A$-going direction). Such effects are quantified by measuring nuclear modification factors as a function of transverse momentum and pseudorapidity in various collision multiplicity selections. In central $p$$+$Al and $p$$+$Au collisions, a suppression (enhancement) is observed at forward (backward) rapidity compared to the binary scaled yields in $p$+$p$ collisions. The magnitude of enhancement at backward rapidity is larger in $p$$+$Au collisions than in $p$$+$Al collisions, which have a smaller number of participating nucleons. However, the results at forward rapidity show a similar suppression within uncertainties. The results in the integrated centrality are compared with calculations using nuclear parton distribution functions, which show a reasonable agreement at the forward rapidity but fail to describe the backward rapidity enhancement.

We report on event structure and double helicity asymmetry ($A_LL$) of jet production in longitudinally polarized p+p collisions at $\sqrt{s}$=200 GeV. Photons and charged particles were measured at midrapidity $|\eta| < 0.35$ with the requirement of a high-momentum ($>2$ GeV/$c$) photon in each event. Measured event structure is compared with {\sc pythia} and {\sc geant} simulations. The shape of jets and the underlying event were well reproduced at this collision energy. For the measurement of jet $A_{LL}$, photons and charged particles were clustered with a seed-cone algorithm to obtain the cluster $p_T$ sum ($p_T^{\rm reco}$). The effect of detector response and the underlying events on $p_T^{\rm reco}$ was evaluated with the simulation. The production rate of reconstructed jets is satisfactorily reproduced with the NLO pQCD jet production cross section. For $4 < p_T^{\rm reco} < 12$ GeV/$c$ with an average beam polarization of $< P > = 49%$ we measured $A_{LL} = -0.0014 \pm 0.0037^{\rm stat}$ at the lowest $p_T^{\rm reco}$ bin (4-5 GeV/$c$) and $-0.0181 \pm 0.0282^{\rm stat}$ at the highest $p_T^{\rm reco}$ bin (10-12 GeV/$c$) with a beam polarization scale error of 9.4% and a $\pT$ scale error of 10%. Jets in the measured $p_T^{\rm reco}$ range arise primarily from hard-scattered gluons with momentum fraction $0.02 < x < 0.3$ according to {\sc pythia}. The measured $A_{LL}$ is compared with predictions that assume various $\Delta G(x)$ distributions based on the GRSV parameterization. The present result imposes the limit $-1.1 < \int_{0.02}^{0.3}dx \Delta G(x, \mu^2 = 1 {\rm GeV}^2) < 0.4$ at 95% confidence level or $\int_{0.02}^{0.3}dx \Delta G(x, \mu^2 = 1 {\rm GeV}^2) < 0.5$ at 99% confidence level.

The PHENIX collaboration at the Relativistic Heavy Ion Collider (RHIC) reports measurements of azimuthal dihadron correlations near midrapidity in $d$$+$Au collisions at $\sqrt{s_{_{NN}}}$=200 GeV. These measurements complement recent analyses by experiments at the Large Hadron Collider (LHC) involving central $p$$+$Pb collisions at $\sqrt{s_{_{NN}}}$=5.02 TeV, which have indicated strong anisotropic long-range correlations in angular distributions of hadron pairs. The origin of these anisotropies is currently unknown. Various competing explanations include parton saturation and hydrodynamic flow. We observe qualitatively similar, but larger, anisotropies in $d$$+$Au collisions compared to those seen in $p$$+$Pb collisions at the LHC. The larger extracted $v_2$ values in $d$$+$Au collisions at RHIC are consistent with expectations from hydrodynamic calculations owing to the larger expected initial-state eccentricity compared with that from $p$$+$Pb collisions. When both are divided by an estimate of the initial-state eccentricity the scaled anisotropies follow a common trend with multiplicity that may extend to heavy ion data at RHIC and the LHC, where the anisotropies are widely thought to arise from hydrodynamic flow.

The second Fourier component v_2 of the azimuthal anisotropy with respect to the reaction plane was measured for direct photons at midrapidity and transverse momentum (p_T) of 1--13 GeV/c in Au+Au collisions at sqr(s_NN)=200 GeV. Previous measurements of this quantity for hadrons with p_T < 6 GeV/c indicate that the medium behaves like a nearly perfect fluid, while for p_T > 6 GeV/c a reduced anisotropy is interpreted in terms of a path-length dependence for parton energy loss. In this measurement with the PHENIX detector at the Relativistic Heavy Ion Collider we find that for p_T > 4 GeV/c the anisotropy for direct photons is consistent with zero, as expected if the dominant source of direct photons is initial hard scattering. However, in the p_T < 4 GeV/c region dominated by thermal photons, we find a substantial direct photon v_2 comparable to that of hadrons, whereas model calculations for thermal photons in this kinematic region significantly underpredict the observed v_2.

The differential cross section for the production of direct photons in p+p collisions at sqrt(s)=200 GeV at midrapidity was measured in the PHENIX detector at the Relativistic Heavy Ion Collider. Inclusive-direct photons were measured in the transverse-momentum range from 5.5--25 GeV/c, extending the range beyond previous measurements. Event structure was studied with an isolation criterion. Next-to-leading-order perturbative-quantum-chromodynamics calculations give a good description of the spectrum. When the cross section is expressed versus x_T, the PHENIX data are seen to be in agreement with measurements from other experiments at different center-of-mass energies.

Measurements of the azimuthal anisotropy of high-\pT neutral pion neutral pion production in Au+Au collisions at sqrt(s_NN) = 200 GeV by the PHENIX experiment are presented. The data included in this paper were collected during the 2004 RHIC running period and represent approximately an order of magnitude increase in the number of analyzed events relative to previously published results. Azimuthal angle distributions of pi^0s detected in the PHENIX electromagnetic calorimeters are measured relative to the reaction plane determined event-by-event using the forward and backward beam-beam counters. Amplitudes of the second Fourier component (v_2) of the angular distributions are presented as a function of pi^0 transverse momentum p_T for different bins in collision centrality. Measured reaction plane dependent pi^0 yields are used to determine the azimuthal dependence of the pi^0 suppression as a function of p_T, R_AA (Delta phi,p_T). A jet-quenching motivated geometric analysis is presented that attempts to simultaneously describe the centrality dependence and reaction plane angle dependence of the pi^0 suppression in terms of the path lengths of hypothetical parent partons in the medium. This set of results allows for a detailed examination of the influence of geometry in the collision region, and of the interplay between collective flow and jet-quenching effects along the azimuthal axis.

In 2015, the PHENIX collaboration has measured single-spin asymmetries for charged pions in transversely polarized proton-proton collisions at the center of mass energy of $\sqrt{s}=200$ GeV. The pions were detected at central rapidities of $|\eta|<0.35$. The single-spin asymmetries are consistent with zero for each charge individually, as well as consistent with the previously published neutral-pion asymmetries in the same rapidity range. However, they show a slight indication of charge-dependent differences which may suggest a flavor dependence in the underlying mechanisms that create these asymmetries.

Background: Heavy-flavor production in p+p collisions tests perturbative-quantum-chromodynamics (pQCD) calculations. Modification of heavy-flavor production in heavy-ion collisions relative to binary-collision scaling from p+p results, quantified with the nuclear-modification factor (R_AA), provides information on both cold- and hot-nuclear-matter effects. Purpose: Determine transverse-momentum, pt, spectra and the corresponding R_AA for muons from heavy-flavor mesons decay in p+p and Cu+Cu collisions at sqrt(s_NN)=200 GeV and y=1.65. Method: Results are obtained using the semi-leptonic decay of heavy-flavor mesons into negative muons. The PHENIX muon-arm spectrometers measure the p_T spectra of inclusive muon candidates. Backgrounds, primarily due to light hadrons, are determined with a Monte-Carlo calculation using a set of input hadron distributions tuned to match measured-hadron distributions in the same detector and statistically subtracted. Results: The charm-production cross section in p+p collisions at sqrt{s}=200 GeV, integrated over pt and in the rapidity range 1.4<y<1.9 is found to be dsigma_ccbar/dy = 0.139 +/- 0.029 (stat) ^{+0.051}_{-0.058} (syst) mb. This result is consistent with calculations and with expectations based on the corresponding midrapidity charm-production cross section measured earlier by PHENIX. The R_AA for heavy-flavor muons in Cu+Cu collisions is measured in three centrality intervals for 1<pt<4 GeV/c. Suppression relative to binary-collision scaling (R_AA<1) increases with centrality. Conclusions: Within experimental and theoretical uncertainties, the measured heavy-flavor yield in p+p collisions is consistent with state-of-the-art pQCD calculations. Suppression in central Cu+Cu collisions suggests the presence of significant cold-nuclear-matter effects and final-state energy loss.

The PHENIX experiment has measured electrons and positrons at midrapidity from the decays of hadrons containing charm and bottom quarks produced in d+Au and p+p collisions at sqrt(s_NN)=200 GeV at the Relativistic Heavy Ion Collider, in the transverse-momentum range 0.85 < pT < 8.5 GeV/c. In central d+Au collisions, the nuclear modification factor R_dA at 1.5 < pT < 5 GeV/c displays evidence of enhancement of these electrons, relative to those produced in p+p collisions, and shows that the mass-dependent Cronin enhancement observed at RHIC extends to the heavy-D-meson family. A comparison with the neutral-pion data suggests that the difference in cold-nuclear-matter effects on light- and heavy-flavor mesons could contribute to the observed differences between the pi0 and heavy-flavor-electron nuclear modification factor R_AA.

The invariant differential cross section for inclusive neutral pion production in p+p collisions at sqrt(s_NN) = 200 GeV has been measured at mid-rapidity |eta| < 0.35 over the range 1 < p_T <~ 14 GeV/c by the PHENIX experiment at RHIC. Predictions of next-to-leading order perturbative QCD calculations are consistent with these measurements. The precision of our result is sufficient to differentiate between prevailing gluon-to-pion fragmentation functions.

A measurement of direct photons in p+p collisions at sqrt(s)=200 GeV is presented. A photon excess above background from pi^0 --> gamma+gamma, eta --> gamma+gamma, and other decays is observed in the transverse momentum range 5.5 < p_T < 7 GeV/c. The result is compared to a next-to-leading-order perturbative QCD calculation. Within errors, good agreement is found between the QCD calculation and the measured result.

The production of deuterons and antideuterons in the transverse momentum range 1.1 < p_T < 4.3 GeV/c at mid-rapidity in Au + Au collisions at sqrt(s_NN)=200 GeV has been studied by the PHENIX experiment at RHIC. A coalescence analysis comparing the deuteron and antideuteron spectra with those of protons and antiprotons, has been performed. The coalescence probability is equal for both deuterons and antideuterons and increases as a function of p_T, which is consistent with an expanding collision zone. Comparing (anti)proton yields p_bar/p = 0.73 +/- 0.01, with (anti)deuteron yields: d_bar/d = 0.47 +/- 0.03, we estimate that n_bar/n = 0.64 +/- 0.04.

The momentum distribution of electrons from decays of heavy flavor (charm and beauty) for midrapidity |y| < 0.35 in p+p collisions at sqrt(s) = 200 GeV has been measured by the PHENIX experiment at the Relativistic Heavy Ion Collider (RHIC) over the transverse momentum range 0.3 < p_T < 9 GeV/c. Two independent methods have been used to determine the heavy flavor yields, and the results are in good agreement with each other. A fixed-order-plus-next-to-leading-log pQCD calculation agrees with the data within the theoretical and experimental uncertainties, with the data/theory ratio of 1.72 +/- 0.02^stat +/- 0.19^sys for 0.3 < p_T < 9 GeV/c. The total charm production cross section at this energy has also been deduced to be sigma_(c c^bar) = 567 +/- 57^stat +/- 224^sys micro barns.

We present the first measurement of photoproduction of J/psi and of two-photon production of high-mass e+e- pairs in electromagnetic (or ultra-peripheral) nucleus-nucleus interactions, using Au+Au data at sqrt(s_NN) = 200 GeV. The events are tagged with forward neutrons emitted following Coulomb excitation of one or both Au^{star} nuclei. The event sample consists of 28 events with m_{e+e-} > 2 GeV/c^2 with zero like-sign background. The measured cross sections at midrapidity of d\sigma / dy (J/psi + Xn, y=0) = 76 +/- 33 (stat) +/- 11 (syst) micro b and d^2\sigma/dm dy (e^+e^- + Xn, y=0) = 86 +/- 23 (stat) +/- 16 (syst) micro b/(GeV/c^2) for m_{e+e-} \in [2.0,2.8] GeV/c^2 are consistent with various theoretical predictions.

Transverse momentum distributions and yields for $\pi^{\pm}$, $K^{\pm}$, $p$ and $\bar{p}$ in $p+p$ collisions at $\sqrt{s}$=200 and 62.4 GeV at midrapidity are measured by the PHENIX experiment at the Relativistic Heavy Ion Collider (RHIC). These data provide important baseline spectra for comparisons with identified particle spectra in heavy ion collisions at RHIC. We present the inverse slope parameter $T_{\rm inv}$, mean transverse momentum $<p_T>$ and yield per unit rapidity $dN/dy$ at each energy, and compare them to other measurements at different $\sqrt{s}$ in $p+p$ and $p+\bar{p}$ collisions. We also present the scaling properties such as $m_T$ scaling, $x_T$ scaling on the $p_T$ spectra between different energies. To discuss the mechanism of the particle production in $p+p$ collisions, the measured spectra are compared to next-to-leading-order or next-to-leading-logarithmic perturbative quantum chromodynamics calculations.

Heavy quarkonia are observed to be suppressed in relativistic heavy ion collisions relative to their production in p+p collisions scaled by the number of binary collisions. In order to determine if this suppression is related to color screening of these states in the produced medium, one needs to account for other nuclear modifications including those in cold nuclear matter. In this paper, we present new measurements from the PHENIX 2007 data set of J/psi yields at forward rapidity (1.2<|y|<2.2) in Au+Au collisions at sqrt(s_NN)=200 GeV. The data confirm the earlier finding that the suppression of J/psi at forward rapidity is stronger than at midrapidity, while also extending the measurement to finer bins in collision centrality and higher transverse momentum (pT). We compare the experimental data to the most recent theoretical calculations that incorporate a variety of physics mechanisms including gluon saturation, gluon shadowing, initial-state parton energy loss, cold nuclear matter breakup, color screening, and charm recombination. We find J/psi suppression beyond cold-nuclear-matter effects. However, the current level of disagreement between models and d+Au data precludes using these models to quantify the hot-nuclear-matter suppression.

Flow coefficients v_n for n = 2, 3, 4, characterizing the anisotropic collective flow in Au+Au collisions at sqrt(s_NN) = 200 GeV, are measured relative to event planes Ψ_n determined at large rapidity. We report v_n as a function of transverse momentum and collision centrality, and study the correlations among the event planes of different order n. The v_n are well described by hydrodynamic models which employ a Glauber Monte Carlo initial state geometry with fluctuations, providing additional constraining power on the interplay between initial conditions and the effects of viscosity as the system evolves. This new constraint improves precision of the extracted viscosity to entropy density ratio eta/s.

New measurements by the PHENIX experiment at RHIC for eta production at midrapidity as a function of transverse momentum (p_T) and collision centrality in sqrt(s_NN) = 200 GeV Au+Au and p+p collisions are presented. They indicate nuclear modification factors (R_AA) that are similar both in magnitude and trend to those found in earlier pi^0 measurements. Linear fits to R_AA in the 5--20 GeV/c p_T region show that the slope is consistent with zero within two standard deviations at all centralities although a slow rise cannot be excluded. Having different statistical and systematic uncertainties the pi^0 and eta measurements are complementary at high p_T/ thus, along with the extended p_T range of these data they can provide additional constraints for theoretical modeling and the extraction of transport properties.

We report on charmonium measurements [J/psi(1S), psi'(2S), and chi_c(1P)] in p+p collisions at sqrt(s)=200 GeV. We find that the fraction of J/psi coming from the feed-down decay of psi' and chi_c in the midrapidity region ($|\eta|<0.35$) is 9.6+/-2.4% and 32+/-9%, respectively. We also report new, higher statistics p_T and rapidity dependencies of the J/psi yield via dielectron decay in the same midrapidity range and at forward rapidity (1.2<|eta|<2.4) via dimuon decay. These results are compared with measurements from other experiments and discussed in the context of current charmonium production models.

Fast parton probes produced by hard scattering and embedded within collisions of large nuclei have shown that partons suffer large energy loss and that the produced medium may respond collectively to the lost energy. We present measurements of neutral pion trigger particles at transverse momenta p^t_T = 4-12 GeV/c and associated charged hadrons (p^a_T = 0.5-7 GeV/c) as a function of relative azimuthal angle Delta Phi at midrapidity in Au+Au and p+p collisions at sqrt(s_NN) = 200 GeV. These data lead to two major observations. First, the relative angular distribution of low momentum hadrons, whose shape modification has been interpreted as a medium response to parton energy loss, is found to be modified only for p^t_T &lt; 7 GeV/c. At higher p^t_T, the data are consistent with unmodified or very weakly modified shapes, even for the lowest measured p^a_T. This observation presents a quantitative challenge to medium response scenarios. Second, the associated yield of hadrons opposite to the trigger particle in Au+Au relative to that in p+p (I_AA) is found to be suppressed at large momentum (IAA ~ 0.35-0.5), but less than the single particle nuclear modification factor (R_AA ~0.2).

We report on $J/\psi$ production from asymmetric Cu+Au heavy-ion collisions at $\sqrt{s_{_{NN}}}$=200 GeV at the Relativistic Heavy Ion Collider at both forward (Cu-going direction) and backward (Au-going direction) rapidities. The nuclear modification of $J/\psi$ yields in Cu$+$Au collisions in the Au-going direction is found to be comparable to that in Au$+$Au collisions when plotted as a function of the number of participating nucleons. In the Cu-going direction, $J/\psi$ production shows a stronger suppression. This difference is comparable in magnitude and has the same sign as the difference expected from shadowing effects due to stronger low-$x$ gluon suppression in the larger Au nucleus. The relative suppression is opposite to that expected from hot nuclear matter dissociation, since a higher energy density is expected in the Au-going direction.

We present measured J/psi production rates in d+Au collisions at sqrt(s_NN) = 200 GeV over a broad range of transverse momentum (p_T=0-14 GeV/c) and rapidity (-2.2<y<2.2). We construct the nuclear-modification factor R_dAu for these kinematics and as a function of collision centrality (related to impact parameter for the R_dAu collision). We find that the modification is largest for collisions with small impact parameters, and observe a suppression (R_dAu<1) for p_T<4 GeV/c at positive rapidities. At negative rapidity we observe a suppression for p_T<2 GeV/c then an enhancement (R_dAu>1) for p_T>2 GeV/c. The observed enhancement at negative rapidity has implications for the observed modification in heavy-ion collisions at high p_T.

The first measurement of direct photons in Au+Au collisions at sqrt(s_NN) = 200 GeV is presented. The direct photon signal is extracted as a function of the Au+Au collision centrality and compared to NLO pQCD calculations. The direct photon yield is shown to scale with the number of nucleon-nucleon collisions for all centralities.

The anisotropy parameter v_2, the second harmonic of the azimuthal particles distribution, has been measured with the PHENIX detector in Au+Au collisions at sqrt(s_NN) = 200 GeV for identified and inclusive charged particles at central rapidities (|eta| < 0.35) with respect to the reaction plane defined at high rapidities (|eta| = 3-4). The v_2 for all particles reaches a maximum at mid-centrality, and increases with p_T up to 2 GeV/c and then saturates or decreases slightly. Our results depart from hydrodynamically predicted behavior above 2 GeV/c. A quark coalescence model is also investigated.

Differential measurements of the elliptic (v_2) and hexadecapole (v_4) Fourier flow coefficients are reported for charged hadrons as a function of transverse momentum (p_T) and collision centrality or the number of participant nucleons (N_part) for Au+Au collisions at sqrt(s_NN)=200 GeV. The v_{2,4} measurements at pseudorapidity |\eta|<=0.35 obtained with four separate reaction plane detectors positioned in the range 1.0<|\eta|<3.9 show good agreement, indicating the absence of significant \eta-dependent nonflow perturbations. Sizable values for v_4(p_T) are observed with a ratio v_4(p_T,N_part)/v_2^2(p_T,N_part)~0.8 for 50<N_part<200, which is compatible with the combined effects of a finite viscosity and initial eccentricity fluctuations. For N_part>200 this ratio increases up to 1.7 in the most central collisions.

Direct photons have been measured in sqrt(s_NN)=200 GeV d+Au collisions at midrapidity. A wide p_T range is covered by measurements of nearly-real virtual photons (1<p_T<6 GeV/c) and real photons (5<p_T<16 GeV/c). The invariant yield of the direct photons in d+Au collisions over the scaled p+p cross section is consistent with unity. Theoretical calculations assuming standard cold nuclear matter effects describe the data well for the entire p_T range. This indicates that the large enhancement of direct photons observed in Au+Au collisions for 1.0<p_T<2.5 GeV/c is due to a source other than the initial-state nuclear effects.

In 2015, the PHENIX collaboration has measured very forward ($\eta>6.8$) single-spin asymmetries of inclusive neutrons in transversely polarized proton-proton and proton-nucleus collisions at a center of mass energy of 200 GeV. A previous publication from this data set concentrated on the nuclear dependence of such asymmetries. In this measurement the explicit transverse-momentum dependence of inclusive neutron single spin asymmetries for proton-proton collisions is extracted using a bootstrapping-unfolding technique on the transverse momenta. This explicit transverse-momentum dependence will help improve the understanding of the mechanisms that create these asymmetries.

We report a measurement of $e^+e^-$ pairs from semileptonic heavy-flavor decays in $d$$+$Au collisions at $\sqrt{s_{_{NN}}}=200$ GeV. Exploring the mass and transverse-momentum dependence of the yield, the bottom decay contribution can be isolated from charm, and quantified by comparison to {\sc pythia} and {\sc mc@nlo} simulations. The resulting $b\bar{b}$-production cross section is $\sigma^{d{\rm Au}}_{b\bar{b}}=1.37{\pm}0.28({\rm stat}){\pm}0.46({\rm syst})$~mb, which is equivalent to a nucleon-nucleon cross section of $\sigma^{NN}_{bb}=3.4\pm0.8({\rm stat}){\pm}1.1({\rm syst})\ \mu$b.

We report the first measurement of the full angular distribution for inclusive $J/\psi\rightarrow\mu^{+}\mu^{-}$ decays in $p$$+$$p$ collisions at $\sqrt{s}=510$ GeV. The measurements are made for $J/\psi$ transverse momentum $2<p_{T}<10$ GeV/$c$ and rapidity $1.2<y<2.2$ in the Helicity, Collins-Soper, and Gottfried-Jackson reference frames. In all frames the polar coefficient $\lambda_{\theta}$ is strongly negative at low $p_{T}$ and becomes close to zero at high $p_{T}$, while the azimuthal coefficient $\lambda_{\phi}$ is close to zero at low $p_{T}$, and becomes slightly negative at higher $p_{T}$. The frame-independent coefficient $\tilde{\lambda}$ is strongly negative at all $p_{T}$ in all frames. The data are compared to the theoretical predictions provided by nonrelativistic quantum chromodynamics models.